Table 1:
General statistics associated with the quality controls of the WES and WGS data
| Sample | Sequencing | Median coverage | Total No. reads (M) | >30× (%) | Aligned (%) | GC content (%) | Median insert size | Duplicates (%) |
|---|---|---|---|---|---|---|---|---|
| LNEN002 | WES | 148 | 113.3 | 95.5 | 99.7 | 53.7 | 194 | 13.9 |
| LNEN003 | WES | 146 | 110.3 | 95.8 | 99.7 | 53.7 | 194 | 13.4 |
| LNEN004 | WES | 150 | 115.3 | 95.4 | 99.8 | 54.3 | 193 | 13.1 |
| LNEN005 | WES | 135 | 103.4 | 94.7 | 99.8 | 54.0 | 195 | 12.1 |
| LNEN006 | WES | 126 | 93.6 | 94.6 | 99.8 | 53.5 | 197 | 12.5 |
| LNEN007 | WES | 145 | 116.3 | 94.4 | 99.8 | 54.5 | 195 | 14.8 |
| LNEN009 | WES | 123 | 98.4 | 92.9 | 99.7 | 54.1 | 195 | 12.4 |
| LNEN010 | WES | 138 | 104.1 | 95.0 | 99.7 | 53.3 | 196 | 13.4 |
| LNEN011 | WES | 161 | 125.8 | 95.8 | 99.8 | 54.3 | 196 | 14.8 |
| LNEN013 | WES | 131 | 99.2 | 94.3 | 99.8 | 53.5 | 193 | 13.0 |
| LNEN014 | WES | 132 | 102.6 | 94.0 | 99.8 | 54.1 | 195 | 13.3 |
| LNEN015 | WES | 148 | 111.3 | 95.7 | 99.6 | 54.1 | 197 | 10.1 |
| LNEN016 | WES | 133 | 98.0 | 94.3 | 99.6 | 54.3 | 194 | 9.0 |
| LNEN017 | WES | 158 | 116.4 | 95.9 | 99.6 | 54.1 | 192 | 8.9 |
| LNEN020 | WES | 187 | 144.7 | 96.6 | 99.7 | 53.6 | 192 | 14.5 |
| S00716_B | WES | 133 | 99.8 | 95.4 | 99.7 | 52.8 | 194 | 14.3 |
| LNEN041 | WGS | 36 | 923.5 | 77.5 | 98.9 | 41.0 | 366 | 13.3 |
| LNEN042 | WGS | 41 | 993.7 | 88.1 | 98.8 | 41.5 | 388 | 9.4 |
| LNEN043 | WGS | 43 | 1033.1 | 89.7 | 99.3 | 41.6 | 392 | 8.8 |
GC: guanine-cytosine.