Table A1.
Significant FASs reported by TMEA in constraints 1–3. The p-values were clustered using the k-means clustering algorithm with a cluster number of 6 (cluster ID 1–6). The corresponding heatmap is depicted in Figure 4.
| cID | MapMan Annotation (FAS) | cID | MapMan Annotation (FAS) |
|---|---|---|---|
| 1 | cell wall.cell wall proteins | 4 | major CHO metabolism |
| 1 | cell wall.cell wall proteins.AGPs | 4 | major CHO metabolism.degradation |
| 1 | cell wall.cell wall proteins.AGPs.AGP | 4 | major CHO metabolism.degradation.starch |
| 1 | cell wall.pectin*esterases.misc | 4 | misc.invertase/pectin methylesterase inhibitor family protein |
| 1 | lipid metabolism.FA desaturation | 4 | not assigned.no ontology.DC1 domain containing protein |
| 1 | lipid metabolism.FA desaturation.desaturase | 4 | not assigned.unknown |
| 1 | misc.beta 1,3 glucan hydrolases | 4 | RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family |
| 1 | misc.beta 1,3 glucan hydrolases.glucan endo-1,3-beta-glucosidase | 4 | RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family |
| 1 | misc.glutathione S transferases | 4 | RNA.regulation of transcription.C2C2(Zn) DOF zinc finger family |
| 1 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | 4 | RNA.regulation of transcription.MYB-related transcription factor family |
| 1 | misc.O-methyl transferases | 4 | RNA.regulation of transcription.Psudo ARR transcription factor family |
| 1 | misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | 4 | secondary metabolism.isoprenoids.terpenoids |
| 1 | nucleotide metabolism.synthesis.purine | 4 | secondary metabolism.phenylpropanoids.lignin biosynthesis |
| 1 | protein | 4 | stress.abiotic |
| 1 | protein.degradation.AAA type | 4 | stress.abiotic.cold |
| 1 | protein.synthesis | 4 | stress.biotic.respiratory burst |
| 1 | protein.synthesis.ribosomal protein | 4 | transport.sulfate |
| 1 | protein.synthesis.ribosomal protein.eukaryotic | 5 | cell wall |
| 1 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit | 5 | cell wall.modification |
| 1 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit | 5 | misc |
| 1 | protein.synthesis.ribosomal protein.prokaryotic.chloroplast | 5 | secondary metabolism |
| 1 | protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit | 5 | secondary metabolism.flavonoids |
| 1 | protein.synthesis.ribosome biogenesis | 5 | secondary metabolism.flavonoids.anthocyanins |
| 1 | protein.synthesis.ribosome biogenesis.Pre-rRNA processing and modifications | 5 | secondary metabolism.flavonoids.anthocyanins.anthocyanin 5-aromatic acyltransferase |
| 1 | protein.synthesis.ribosome biogenesis.Pre-rRNA processing and modifications.snoRNPs | 5 | secondary metabolism.flavonoids.dihydroflavonols |
| 1 | protein.synthesis.ribosome biogenesis.Pre-rRNA processing and modifications.WD-repeat proteins | 5 | stress |
| 1 | redox.glutaredoxins | 5 | stress.biotic |
| 1 | RNA.regulation of transcription.ARR | 5 | transport |
| 1 | RNA.regulation of transcription.NAC domain transcription factor family | 6 | cell wall.degradation |
| 1 | RNA.regulation of transcription.WRKY domain transcription factor family | 6 | cell wall.degradation.mannan-xylose-arabinose-fucose |
| 1 | secondary metabolism.simple phenols | 6 | DNA.synthesis/chromatin structure.retrotransposon/transposase |
| 1 | signaling | 6 | DNA.synthesis/chromatin structure.retrotransposon/transposase.gypsy-like retrotransposon |
| 1 | signaling.in sugar and nutrient physiology | 6 | hormone metabolism |
| 1 | signaling.receptor kinases.DUF 26 | 6 | hormone metabolism.auxin |
| 1 | signaling.receptor kinases.misc | 6 | minor CHO metabolism |
| 1 | signaling.receptor kinases.wall associated kinase | 6 | minor CHO metabolism.trehalose |
| 1 | signaling.receptor kinases.wheat LRK10 like | 6 | minor CHO metabolism.trehalose.potential TPS/TPP |
| 1 | stress.biotic.PR-proteins.plant defensins | 6 | misc.gluco-, galacto- and mannosidases |
| 1 | transport.Major Intrinsic Proteins | 6 | not assigned.no ontology.glycine rich proteins |
| 2 | amino acid metabolism.synthesis | 6 | not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein |
| 2 | amino acid metabolism.synthesis.aspartate family | 6 | PS.lightreaction |
| 2 | development.storage proteins | 6 | PS.lightreaction.photosystem II |
| 2 | hormone metabolism.auxin.induced-regulated-responsive-activated | 6 | PS.lightreaction.photosystem II.LHC-II |
| 2 | nucleotide metabolism.synthesis | 6 | secondary metabolism.flavonoids.chalcones |
| 2 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L7A | 6 | secondary metabolism.flavonoids.flavonols |
| 2 | protein.synthesis.ribosomal protein.prokaryotic | 6 | secondary metabolism.phenylpropanoids |
| 2 | signaling.calcium | 6 | signaling.light |
| 2 | stress.biotic.receptors | 6 | transport.ABC transporters and multidrug resistance systems |
| 2 | transport.Major Intrinsic Proteins.PIP | 6 | transport.sugars |
| 3 | misc.cytochrome P450 | ||
| 3 | misc.GDSL-motif lipase | ||
| 3 | misc.peroxidases | ||
| 3 | signaling.receptor kinases | ||
| 3 | stress.biotic.PR-proteins |