Table 3.
Characteristics of the reads from 12 embryo liver libraries.
| Sample ID | raw_reads | clean_reads | error_rate (%) | Q20(%) | GC_pct (%) | Mapping ratio (%)1 |
|---|---|---|---|---|---|---|
| CON1 | 62224764 | 59541880 | 0.03 | 97.26 | 50.47 | 86.74 |
| CON2 | 55061878 | 53710768 | 0.03 | 97.72 | 51.6 | 86.39 |
| CON3 | 62178520 | 59409776 | 0.03 | 97.34 | 50.91 | 85.37 |
| LPS1 | 64366450 | 61450866 | 0.03 | 97.12 | 50.33 | 83.57 |
| LPS2 | 72871048 | 70213034 | 0.03 | 97.6 | 51.07 | 86.38 |
| LPS3 | 64512976 | 62363488 | 0.03 | 97.49 | 51.54 | 85.55 |
| GEN1 | 60596774 | 59548220 | 0.02 | 98.02 | 51.83 | 90.94 |
| GEN2 | 67568632 | 65994052 | 0.02 | 97.91 | 51.18 | 89.54 |
| GEN3 | 62051554 | 60598094 | 0.02 | 97.98 | 51.62 | 90.46 |
Units: reads, n.
Abbreviations: CON, nonchallenge control; GC, guanine-cytosine; GEN, lipopolysaccharide-challenged group fed diet supplemented with 40 mg/kg genistein; ID, identification; LPS, lipopolysaccharide-challenged group; Q20, Phred quality score.
1
Mapping ratio, mapped reads/all reads.