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. 2020 Oct 29;183(3):717–729.e16. doi: 10.1016/j.cell.2020.09.021
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Polyclonal anti human MUC2-D3 This study N/A
Polyclonal anti mouse Muc2-D3 This study N/A
Goat anti rabbit HRP Jackson ImmunoResearch Cat# 111-035-003; RRID: AB_2313567

Bacterial and Virus Strains

E. coli XL-1 blue Agilent Cat# 200249

Biological Samples

Murine colon lumen extracts This study N/A

Chemicals, Peptides, and Recombinant Proteins

Tobacco Etch Virus protease Produced in-house N/A
Secreted protease of C1 esterase inhibitor (StcE) Expression plasmid provided by Carolyn Bertozzi; Malaker et al., 2019 N/A
Protein produced in-house
PEI MAX reagent Polysciences Cat# 24765-1

Deposited Data

One-bead cryo-EM map This study EMDB: 10517
Two-bead cryo-EM map This study EMDB: 11658
MUC2 D1D2D3CysD1 atomic coordinates This study PDB: 6TM2
Atomic coordinates for three beads of the MUC2 head filament This study PDB: 7A5O
CysD1 atomic coordinates This study PDB: 6TM6
MUC2 D3 dimer atomic coordinates Javitt et al., 2019 PDB: 65BF
VWF D'D3 module atomic coordinates Dong et al., 2019 PDB: 6N29

Experimental Models: Cell Lines

FreeStyle 293-F Cells Thermo Fisher Scientific Cat# R79007

Experimental Models: Organisms/Strains

C57Bl mice Bred in house N/A

Recombinant DNA

MUC2 D1D2D3CysD1 expression plasmid Javitt et al., 2019 Addgene ID: 155214
MUC2 D1D2D3 expression plasmid Javitt et al., 2019 Addgene ID: 155215
MUC2 D3 expression plasmid Javitt et al., 2019 Addgene ID: 155216
MUC2 CysD1 expression plasmid This study N/A
MUC2 D1D2D3CysD1 C1088A expression plasmid This study N/A
MUC2 D1D2D3CysD1 C1130A expression plasmid This study N/A
MUC2 D1D2D3CysD1 C1088A/C1130A expression plasmid This study N/A
Muc5b D1D2D3CysD1 expression plasmid This study N/A

Software and Algorithms

SerialEM Mastronarde, 2005 https://bio3d.colorado.edu/SerialEM/
Pymol DeLano, 2002 https://pymol.org/2/
Coot Emsley et al., 2010 https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
CryoSPARC Punjani et al., 2017 https://cryosparc.com/
Chimera Pettersen et al., 2004 https://www.cgl.ucsf.edu/chimera/
Phenix Adams et al., 2010 https://www.phenix-online.org/
Modeller Webb and Sali, 2016 https://salilab.org/modeller/
SHELX Sheldrick, 2015 https://ccp4serv7.rcharwell.ac.uk/ccp4online/
Molprobity Chen et al., 2010 http://molprobity.biochem.duke.edu/
SMOG2 Noel et al., 2016 http://smog-server.org/smog2/
GROMACS Pronk et al., 2013 http://www.gromacs.org/
Dynamics Wyatt Technology https://www.wyatt.com/products/software/dynamics.html
MetaMorpheus Solntsev et al., 2018 https://github.com/smith-chem-wisc/MetaMorpheus

Other

Formvar/carbon 300 mesh copper grids Electron Microscopy Sciences Cat# FCF300-Cu
Quantifoil R1/2 300 mesh copper grids Quantifoil Cat# Q3100CR-12