| Antibodies |
|
| Polyclonal anti human MUC2-D3 |
This study |
N/A |
| Polyclonal anti mouse Muc2-D3 |
This study |
N/A |
| Goat anti rabbit HRP |
Jackson ImmunoResearch |
Cat# 111-035-003; RRID: AB_2313567
|
|
| Bacterial and Virus Strains |
|
|
E. coli XL-1 blue |
Agilent |
Cat# 200249 |
|
| Biological Samples |
|
| Murine colon lumen extracts |
This study |
N/A |
|
| Chemicals, Peptides, and Recombinant Proteins |
|
| Tobacco Etch Virus protease |
Produced in-house |
N/A |
| Secreted protease of C1 esterase inhibitor (StcE) |
Expression plasmid provided by Carolyn Bertozzi; Malaker et al., 2019
|
N/A |
| Protein produced in-house |
| PEI MAX reagent |
Polysciences |
Cat# 24765-1 |
|
| Deposited Data |
|
| One-bead cryo-EM map |
This study |
EMDB: 10517 |
| Two-bead cryo-EM map |
This study |
EMDB: 11658 |
| MUC2 D1D2D3CysD1 atomic coordinates |
This study |
PDB: 6TM2
|
| Atomic coordinates for three beads of the MUC2 head filament |
This study |
PDB: 7A5O
|
| CysD1 atomic coordinates |
This study |
PDB: 6TM6
|
| MUC2 D3 dimer atomic coordinates |
Javitt et al., 2019 |
PDB: 65BF
|
| VWF D'D3 module atomic coordinates |
Dong et al., 2019 |
PDB: 6N29
|
|
| Experimental Models: Cell Lines |
|
| FreeStyle 293-F Cells |
Thermo Fisher Scientific |
Cat# R79007
|
|
| Experimental Models: Organisms/Strains |
|
| C57Bl mice |
Bred in house |
N/A |
|
| Recombinant DNA |
|
| MUC2 D1D2D3CysD1 expression plasmid |
Javitt et al., 2019 |
Addgene ID: 155214 |
| MUC2 D1D2D3 expression plasmid |
Javitt et al., 2019 |
Addgene ID: 155215 |
| MUC2 D3 expression plasmid |
Javitt et al., 2019 |
Addgene ID: 155216 |
| MUC2 CysD1 expression plasmid |
This study |
N/A |
| MUC2 D1D2D3CysD1 C1088A expression plasmid |
This study |
N/A |
| MUC2 D1D2D3CysD1 C1130A expression plasmid |
This study |
N/A |
| MUC2 D1D2D3CysD1 C1088A/C1130A expression plasmid |
This study |
N/A |
| Muc5b D1D2D3CysD1 expression plasmid |
This study |
N/A |
|
| Software and Algorithms |
|
| SerialEM |
Mastronarde, 2005 |
https://bio3d.colorado.edu/SerialEM/ |
| Pymol |
DeLano, 2002 |
https://pymol.org/2/ |
| Coot |
Emsley et al., 2010 |
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/ |
| CryoSPARC |
Punjani et al., 2017 |
https://cryosparc.com/ |
| Chimera |
Pettersen et al., 2004 |
https://www.cgl.ucsf.edu/chimera/ |
| Phenix |
Adams et al., 2010 |
https://www.phenix-online.org/ |
| Modeller |
Webb and Sali, 2016 |
https://salilab.org/modeller/ |
| SHELX |
Sheldrick, 2015 |
https://ccp4serv7.rcharwell.ac.uk/ccp4online/ |
| Molprobity |
Chen et al., 2010 |
http://molprobity.biochem.duke.edu/ |
| SMOG2 |
Noel et al., 2016 |
http://smog-server.org/smog2/ |
| GROMACS |
Pronk et al., 2013 |
http://www.gromacs.org/ |
| Dynamics |
Wyatt Technology |
https://www.wyatt.com/products/software/dynamics.html |
| MetaMorpheus |
Solntsev et al., 2018 |
https://github.com/smith-chem-wisc/MetaMorpheus |
|
| Other |
|
| Formvar/carbon 300 mesh copper grids |
Electron Microscopy Sciences |
Cat# FCF300-Cu |
| Quantifoil R1/2 300 mesh copper grids |
Quantifoil |
Cat# Q3100CR-12 |