Table 1.
Recapitulation of Number of Cells and Genes at the Different Stages of the Quality Control Process of the scRNA-Seq Data Analyses
|
Mtb. Aerosol Challenge |
Serial Engraftment |
|||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| LKS |
Progenitors |
LKS |
Progenitors |
|||||||
| PBS | Mtb | PBS | Mtb | PBS | BCG | Mtb | PBS | BCG | Mtb | |
| Cells | 3,305 | 6,580 | 3,741 | 8,259 | 5,391 | 4,673 | 2,786 | 5,094 | 8,987 | 11,994 |
| Genes | 31,053 | 31,053 | 31,053 | 31,053 | ||||||
| Genes > 5 cells | 16,071 | 15,103 | 17,019 | 16,268 | ||||||
| Filtered cells | 2,388 | 3,310 | 2,241 | 3,504 | 3,872 | 2,524 | 1,563 | 3,353 | 5,020 | 1,486 |
| Filtered genes | 15,550 | 14,568 | 16,480 | 15,676 | ||||||