Table 1.

A comparison of the FPGA and CPU implementation of variant calling of the NA12878 data.

Method	Variant type	FP	FN	TP	Precision	Sensitivity	Time (min)	Memory (GB)
GTX-One	InDel	8711	15,999	464,578	0.9816	0.9667	33	33.2
	SNP	14,706	20,601	3,188,714	0.9954	0.9936
GBP	InDel	6339	11,312	469,265	0.9867	0.9765	1904	30
	SNP	9312	31,760	3,177,555	0.9971	0.9901