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. 2020 Oct 4;10(10):1967. doi: 10.3390/nano10101967

Table 3.

Binding-free energy values of five sample proteins for their structures taken from the PDB and calculated using I-TASSER on for titanium dioxide NPs of radius 5, 50, 100, and 200 nm.

ID Structure E(R = 5 nm)
[ kBT]
E(R = 50 nm)
[kBT]
E(R = 100 nm)
[kBT]
E(R = 200 nm)
[kBT]
1AX8 PDB −13.3 −15.0 −15.1 −15.1
I-TASSER −9.4 −11.6 −11.8 −11.9
1F5F PDB −16.1 −20.0 −20.0 −20.3
I-TASSER −15.5 −18.9 −18.9 −19.0
1GQV PDB −2.9 −6.3 −6.7 −6.8
I-TASSER −4.3 −9.2 −9.6 −9.7
1HPT PDB −7.3 −8.7 −8.9 −9.0
I-TASSER −7.1 −9.8 −9.9 −10.1
1HUP PDB −11.7 −16.8 −16.6 −16.4
I-TASSER −11.7 −14.1 −14.6 −14.6