Table 2.
Heat map showing a group of DE genes in P. dicentrarchi, including genes related to ribosome biogenesis, DNA transcription, cell cycle, metabolism, mitochondrial respiratory chain and detoxification, at 1, 2 and 4 hpi. Results are expressed as mean expression ratios of groups 1, 2, and 4 hpi vs. 0 h. Red indicates increased gene expression levels; green indicates decreased levels.
| Gene Name | Gen Abbrev. | 1 h | 2 h | 4 h |
|---|---|---|---|---|
| regulator of rdna transcription 15 | rrt15 | −19.2921801 | 305.2526145 | 14961.40172 |
| pre-rrna-processing tsr1 homolog | tsr1 | 8.39214507 | 17.7662126 | 12.40935626 |
| ribosome biogenesis regulatory homolog | rrs1 | 8.397288759 | 17.61314827 | 10.18017877 |
| 60s ribosome subunit biogenesis nip7 | nip7 | 11.22783554 | 17.445352 | |
| ribosome biogenesis bop1 | bop1 | 7.627651039 | 13.73086419 | 5.8194392 |
| ribosome production factor 1 | rpf1 | 6.256019845 | 11.74039515 | 5.947145101 |
| u3 small nucleolar rna-associated 6 | utp6 | 7.9733096 | 17.52126323 | 7.607224123 |
| eukaryotic translation initiation factor 6 | eif6 | 3.03261779 | 4.997917367 | |
| eukaryotic translation initiation factor 3 subunit l | eif-3 | 2.695718872 | 4.426628843 | |
| atp-dependent rna helicase has1 | has1 | 11.52254521 | 16.62575106 | 5.879612164 |
| rna polymerase i subunit 1 | rpa1 | 6.376072721 | 9.0470461 | 5.741738543 |
| rna polymerase i subunit 2 | rpa2 | 4.419921248 | 7.480794029 | |
| cyclin-dependent kinase 2 | cdk2 | 179.5992883 | 233.6336546 | 119.049648 |
| cyclin-dependent kinase 1 | cdk1 | −3.206564057 | −9.082843233 | −8.784823344 |
| cyclin-b2-3 | ccnb23 | −2.98467857 | −5.526397608 | |
| cyclin-dependent kinases regulatory subunit 2 | ppp2r1a | −4.068280735 | −4.813378142 | |
| centrosomal of 78 kda | cep78 | −4.499861387 | −7.279573252 | |
| triose-phosphate isomerase | tpi1 | −5.037605277 | ||
| isocitrate dehydrogenase | idhp | −3.619776764 | −18.74348161 | |
| citrate synthase | cs | −3.677561365 | −12.28402905 | |
| acetyl-coenzyme a synthetase | acsa | −4.375876016 | −8.810778878 | |
| cytochrome c mitochondrial | ccpr | −3.056139192 | −7.538025415 | |
| cytochrome c oxidase subunit 1 | cox1 | −14.4260752 | ||
| cytochrome c oxidase subunit 2 | cox2 | −27.83893378 | ||
| hypoxia up-regulated 1 | hyou1 | −3.4739462 | −8.629031534 | −8.645030215 |
| cytochrome p450 3a19 | cyp3a19 | −22.82674295 | ||
| cytochrome p450 4b1 | cyp4b1 | −3.684326503 | ||
| cytochrome p450 4e3 | cyp4e3 | −28.32575971 | ||
| glutathione s-transferase 2 | gstm2 | −5.124694687 | −15.81386515 | |
| glutathione s-transferase 3 | gst3 | −5.175570202 | −24.89756053 | |
| glutathione s-transferase theta-2b | gst | −2.786019803 | ||
| trichocyst matrix t1-b | t1-b | −13.95 | −14.54 | |
| trichocyst matrix t2-a | t2-a | −3.67 | −12.13 | −13.88 |
| trichocyst matrix t4-b | t4-b | −3.92 | −8 | −14.84 |