Table 1.
Identification and expression of pattern-recognition receptor homologs in B. rapa genome
| Pattern | Receptor | A. thaliana gene ID | B. rapa gene ID (subgenome)a | Expression (FPKM)b | ||
|---|---|---|---|---|---|---|
| Root | Stem | Leaf | ||||
| Chitin | CERK1 | AT3G21630 | Bra031293 (LF) | 8.20 | 4.43 | 4.55 |
| LYK5 | AT2G33580 | Bra021861 (MF1) | 61.03 | 68.10 | 37.97 | |
| LYM2 | AT2G17120 | Bra002021 (LF) | 21.93 | 34.51 | 22.89 | |
| Bra009660 (MF2) | 14.98 | 26.23 | 13.47 | |||
| EF-Tu (elf18) | EFR | AT5G20480 | Bra002305 (LF) | 1.29 | 0.38 | 0.99 |
| Bra006560 (MF1) | 0.22 | 0.11 | 0.20 | |||
| Flagellin (flg22) | FLS2 | AT5G46330 | Bra022032 (MF1) | 0.00 | 0.00 | 0.00 |
| Bra017563 (MF2) | 4.59 | 4.51 | 5.97 | |||
| Lipopolysaccharides | LORE | AT1G61380 | Bra031434 (ns) | 0.00 | 1.62 | 10.33 |
| Peptidoglycan | LYM1 | AT1G21880 | Bra017956 (LF) | 26.01 | 50.49 | 11.57 |
| Bra016402 (MF1) | 40.64 | 92.87 | 33.98 | |||
| LYM3 | AT1G77630 | Bra008320 (ns) | 27.29 | 52.13 | 7.93 | |