TABLE 1.

Characteristics of the RNA-seq results obtained in the present study.

Mouse groups		Sample code	Raw reads	Clean reads	Clean bases	Error rate (%)	Q20 (%)a	Q30 (%)b	GC content (%)
11-days post-infection	Infected	T111	68,999,052	65,632,084	9.84G	2.00%	96.08	90.32	49.66
	Infected	T112	70,544,072	67,074,478	10.06G	2.00%	96.03	90.21	49.42
	Infected	T113	69,212,352	65,848,722	9.88G	2.00%	96.09	90.31	49.94
	Control	C111	79,063,632	75,052,192	11.26G	2.00%	96.18	90.54	49.38
	Control	C112	71,692,682	68,026,004	10.2G	2.00%	96.02	99.22	49.74
	Control	C113	70,064,012	66,381,420	9.96G	2.00%	96.06	90.24	49.69
33-day post infection	Infected	T331	68,042,008	66,719,442	10.01G	2.00%	96.71	91.86	48.57
	Infected	T332	71,371,072	69,232,194	10.38G	2.00%	94.96	87.87	49.55
	Infected	T333	67,503,956	64,041,204	9.61G	2.00%	96.06	90.51	50.05
	Control	C331	61,545,672	60,241,390	9.04G	2.00%	96.37	91.90	49.54
	Control	C332	84,972,124	82,414,714	12.36G	2.00%	96.18	90.28	49.87
	Control	C333	70,485,006	69,061,674	10.36G	2.00%	96.81	92.07	50.33

^aThe percentage of bases with a Phred value > 20. ^bThe percentage of bases with a Phred value > 30.