TABLE 2.
Isolates and their identification, sequence status, and patient data availability.
| Species | n total | n (%) sequenceda | n (%) patient data available | n (%) sequenced and data |
| S. dysenteriae | 0 | 0 | 0 | 0 |
| S. flexneri | 104 | 87 (84) | 79 (76) | 79 (76) |
| S. boydii | 3 | 2 (67) | 2 (67) | 2 (67) |
| S. sonnei | 232 | 190 (82) | 168 (72) | 168 (72) |
| Provisional Shigella | 10 | 6 (60) | 8 (80) | 5 (50) |
| EIEC | 64 | 62 (97) | 33 (52) | 32 (50) |
| EIEC/S. flexneri | 1 | 1 (100) | 1 (100) | 1 (100) |
| Total | 414 | 348 (84) | 291 (70) | 287 (69) |
aAll EIEC isolates were sequenced, except for two that were not available anymore. Other selection for sequencing was based on definitive species identification and data availability.