Table 2.
Genome assembly data, MLSTs, and drug resistance determinants of the studied K. pneumonia isolates.
| Sample name | Kleb102 | Kleb22 | Kleb27 | Kleb24 | Kleb28 | Kleb29 | Kleb60 | Kleb85 | Kleb90 | Kleb91 |
|---|---|---|---|---|---|---|---|---|---|---|
| GenBank Accession ID | VOOJ00000000 | VOOA00000000 | VOOD00000000 | VOOC00000000 | VOOE00000000 | VOOF00000000 | VOOG00000000 | VOOH00000000 | VOOB00000000 | VOOI00000000 |
| SRA accession ID | SRR12102917 | SRR12102926 | SRR12102923 | SRR12102924 | SRR12102922 | SRR12102921 | SRR12102920 | SRR12102919 | SRR12102925 | SRR12102918 |
| Reads number | 1040088 | 805318 | 1056762 | 856300 | 926382 | 1259976 | 994296 | 1207354 | 1216382 | 1381726 |
| Coverage | 58.7x | 45.4x | 59.6x | 48.3x | 52.3x | 71.1x | 56.1x | 68.1x | 68.6x | 78.0x |
| Genome assembly length | 5297684 | 5881113 | 5641111 | 5518356 | 5885411 | 5890967 | 5666743 | 5324705 | 5882697 | 5326604 |
| Contig number | 106 | 111 | 76 | 94 | 120 | 118 | 91 | 74 | 108 | 77 |
| N50 metric | 350001 | 307112 | 322041 | 319410 | 307112 | 307112 | 263911 | 358425 | 307112 | 437151 |
| Largest contig length | 1106296 | 770102 | 1334922 | 930837 | 771547 | 799268 | 642551 | 812552 | 799226 | 812552 |
| MLST | ST983-1LV | ST23 | ST23 | ST37 | ST23 | ST23 | ST268 | ST45 | ST23 | ST45 |
| Yersiniabactin | ybt unknown | ybt 1; ICEKp10 | ybt 1; ICEKp10 | — | ybt 1; ICEKp10 | ybt 1; ICEKp10 | ybt 17; ICEKp10 | — | ybt 1; ICEKp10 | — |
| Colibactin | — | clb 2 | clb 2 | — | clb 2 | clb 2 | clb 3 | — | clb 2 | — |
| Aerobactin | — | iuc 1 | iuc 1 | — | iuc 1 | iuc 1 | iuc 1 | — | iuc 1 | — |
| Salmochelin | — | iro 1 | iro 1 | — | iro 1 | iro 1 | iro 1 | — | iro 1 | — |
| rmpA | — | rmpA_2 (KpVP-1), rmpA_2 (KpVP-1) | rmpA_2 (KpVP-1) | — | rmpA_2 (KpVP-1) | rmpA_2 (KpVP-1) | rmpA_2∗(KpVP-1), rmpA_2∗(KpVP-1) | — | rmpA_2 (KpVP-1) | — |
| rmpA2 | — | rmpA2_8, rmpA2_8 | rmpA2_5, rmpA2_5 | — | rmpA2_8, rmpA2_8 | rmpA2_8, rmpA2_8 | rmpA2_2∗, rmpA2_2∗ | — | rmpA2_8, rmpA2_8 | — |
| Wzi | wzi39 | wzi1 | wzi1 | wzi123 | wzi1 | wzi1 | wzi95 | wzi101 | wzi1 | wzi101 |
| K Locus | KL39 | KL1 | KL1 | KL136 | KL1 | KL1 | KL20 | KL24 | KL1 | KL24 |
| O Locus | O3b | O1v2 | O1v2 | O2v2 | O1v2 | O1v2 | O2v1 | O2v1 | O1v2 | O2v1 |
| Aminoglycosides | StrB; StrA∗ | StrB; StrA∗; Aac3-IIa∗; StrB; StrA∗ | — | StrB; StrA | StrB; StrA∗; Aac3-IIa∗ | StrB; StrA∗; Aac3-IIa∗ | StrB; StrA∗; Aph3-Ia∗ | StrB; StrA∗ | StrB; StrA∗; Aac3-IIa∗; StrB; StrA∗ | StrB; StrA∗ |
| Fluoroquinolones | — | QnrB1? | — | — | QnrB1? | QnrB1? | — | — | QnrB1? | — |
| Macrolides | — | — | — | — | — | — | EreA2 | — | — | — |
| Phenicols | CatA1∗ | CatB4 | — | — | CatB4 | CatB4 | — | CatB4 | CatB4 | CatB4 |
| Sulfonamides | SulII∗ | SulII; SulII | — | — | SulII | SulII | SulI; SulII∗ | SulII | SulII; SulII | SulII |
| Tetracyclines | TetA | TetA | — | — | TetA | TetA | — | — | TetA | — |
| Trimethoprim | — | DfrA14; DfrA14 | — | — | DfrA14 | DfrA14 | DfrA5 | DfrA14 | DfrA14 | DfrA14 |
| BLA | SHV-187∗; AmpH∗ | SHV-190∗; AmpH; OXA-1 | SHV-190∗; AmpH | AmpH∗ | SHV-190∗; AmpH; OXA-1 | SHV-190∗; AmpH; OXA-1 | AmpH∗ | AmpH∗; OXA-1 | SHV-190∗; AmpH; OXA-1 | AmpH∗; OXA-1 |
| ESBL | — | CTX-M-15; CTX-M-15 | — | — | CTX-M-15 | CTX-M-15 | SHV-13∗; CTX-M-3; CTX-M-3 | CTX-M-15 | CTX-M-15; CTX-M-15 | CTX-M-15 |
| BSBL | — | — | — | SHV-77∗ | — | — | — | — | — | — |
| BSBL-inhR | TEM-30∗ | TEM-30∗; TEM-30∗ | — | — | TEM-30∗ | TEM-30∗ | — | SHV-26∗; TEM-30∗ | TEM-30∗; TEM-30∗ | SHV-26∗; TEM-30∗ |
MLST, in silico multilocus sequence type; BLA, β-lactamases; BSBL, broad-spectrum β-lactamases, BSBL-inhR, BSBL with resistance to β-lactamase inhibitors, ESBL, extended-spectrum β-lactamases. Asterisked proteins are ones without exact nucleotide and amino acid match.