Table 3.
Study | Compartments | Ions | Platform | Features explained |
---|---|---|---|---|
Rapp et al., 1996 | >>1000 | 2: 2/c; Total >>2000 | NEURON | BAC firing |
Larkum et al., 2004 | 2 | 2: 1/c, +IF model; Total = 2 | Not reported | f-I curves |
Schaefer et al., 2003 | 8 | 7: 6/c; Total = 48 | NEURON | BAC firing; CF |
Hay et al., 2011 | 196 sections; 1018 segments | 8: 9/c S(1); 7/c AD(561); 1/c BD(454); Total = 4390 | NEURON | BAC firing; CF; f-I curves |
Bahl et al., 2012 | 5 sections; 14 segments | 8: 1/c Ah(5); 5/c S(1); 1/c BD(1), 4/c AD(7); Total = 39 | NEURON | BAC firing; f-I curves |
Almog and Korngreen, 2014 | 153 sections; 663 segments | 8: 8/c; Total = 5304 | NEURON | BAC firing; CF |
Chua et al., 2015 | 3 | 1: 1/c AD, + IF model; Total = 1 | NEST | BAC firing |
Yi et al., 2017 | 2 | 3: 2/c S(1), 1/c AD(1); Total = 3 | MATLAB | f-I curves |
Mäki-Marttunen et al., 2018 | 4 sections; 20 segments | 10: 9/c S(1), 1/c BD(1); 7/c AD(5), 7/c T(2); Total = 59 | NEURON | BAC firing; f-I curves; [Ca2+]i |
Current study | 2 | 7: 2/c BD/S(1), 5/c; AD/T(1); Total = 7 | MATLAB | BAC firing; CF; f-I curves; [Ca2+]i; Ih effect; CSD maps |
aThe first, second, third, and fourth columns show the study, number of compartments, number of ionic channels, and the platform used to create the simulated data for each study. The fifth column lists the features that were explained by each study. The column “Ions” provides the following information: , where and are the number of ionic species considered and the number of ionic channels per compartment, respectively. In some cases, the number of ionic channels per compartment depends on the regions of the neuron considered. IF, Integrated and fire model; S, soma; AD, apical dendrites; BD, basal dendrites; T, trunk; Ah, axon hillock.