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. 2020 Oct 28;40(44):8513–8529. doi: 10.1523/JNEUROSCI.0221-20.2020

Table 3.

Summary of previous/current biophysical models used to describe the principal features of L5-PCsa

Study Compartments Ions Platform Features explained
Rapp et al., 1996 >>1000 2: 2/c; Total >>2000 NEURON BAC firing
Larkum et al., 2004 2 2: 1/c, +IF model; Total = 2 Not reported f-I curves
Schaefer et al., 2003 8 7: 6/c; Total = 48 NEURON BAC firing; CF
Hay et al., 2011 196 sections; 1018 segments 8: 9/c S(1); 7/c AD(561); 1/c BD(454); Total = 4390 NEURON BAC firing; CF; f-I curves
Bahl et al., 2012 5 sections; 14 segments 8: 1/c Ah(5); 5/c S(1); 1/c BD(1), 4/c AD(7); Total = 39 NEURON BAC firing; f-I curves
Almog and Korngreen, 2014 153 sections; 663 segments 8: 8/c; Total = 5304 NEURON BAC firing; CF
Chua et al., 2015 3 1: 1/c AD, + IF model; Total = 1 NEST BAC firing
Yi et al., 2017 2 3: 2/c S(1), 1/c AD(1); Total = 3 MATLAB f-I curves
Mäki-Marttunen et al., 2018 4 sections; 20 segments 10: 9/c S(1), 1/c BD(1); 7/c AD(5), 7/c T(2); Total = 59 NEURON BAC firing; f-I curves; [Ca2+]i
Current study 2 7: 2/c BD/S(1), 5/c; AD/T(1); Total = 7 MATLAB BAC firing; CF; f-I curves; [Ca2+]i; Ih effect; CSD maps

aThe first, second, third, and fourth columns show the study, number of compartments, number of ionic channels, and the platform used to create the simulated data for each study. The fifth column lists the features that were explained by each study. The column “Ions” provides the following information: Ns:Nc/c, where Ns and Nc are the number of ionic species considered and the number of ionic channels per compartment, respectively. In some cases, the number of ionic channels per compartment depends on the regions of the neuron considered. IF, Integrated and fire model; S, soma; AD, apical dendrites; BD, basal dendrites; T, trunk; Ah, axon hillock.