Table 5. Detection of PIK3CA mutations in three types of samples from benign patients.
| Sample | cfDNA | FFPE | gDNA | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Coverage | VarReads | VarFreq | Coverage | VarReads | VarFreq | Coverage | VarReads | VarFreq | |||
| 1 | 37,290 | 7,675 | 20.60% | 2,095 | 0 | 0 | 3,728 | 1,308 | 35.12% | ||
| 2 | 36,643 | 11,486 | 31.37% | 705 | 0 | 0 | 1,086 | 0 | 0 | ||
| 3 | 30,621 | 9,918 | 32.42% | 4,060 | 1,192 | 29.42% | 1,513 | 0 | 0 | ||
| 4 | 20,275 | 5,777 | 28.51% | 3,658 | 0 | 0 | 2,164 | 402 | 18.61% | ||
| 5 | 32,658 | 9,314 | 28.55% | 2,880 | 671 | 23.30% | 1,445 | 252 | 17.44% | ||
| 6 | 37,374 | 10,626 | 28.47% | 4,405 | 0 | 0 | 1,052 | 164 | 15.59% | ||
| 7 | 37,490 | 5,964 | 15.92% | 1,815 | 0 | 0 | 2,687 | 0 | 0 | ||
| 8 | 23,675 | 7,468 | 31.56% | 2,948 | 979 | 33.21% | 2,841 | 0 | 0 | ||
| 9 | 31,457 | 9,374 | 29.81% | 5,377 | 16,81 | 31.30% | 2,937 | 538 | 18.33% | ||
| 10 | 38,797 | 10,842 | 27.98% | 8,679 | 2,462 | 28.39% | 6,207 | 0 | 0 | ||
cfDNA, cell-free DNA; FFPE, formalin-fixed and paraffin-embedded.