Table 2.
Detailed interactions profile between carvacrol and rapamycin at the interface cavity of FKBP12 and mTOR–FRB domain.
| Interactions with FKBP12 protein | Interactions with mTOR–FRB domain | |||||
|---|---|---|---|---|---|---|
| Ligand | H-bond interactions <3 Å (n) | Van der Waals contacts (n) | σ/π-π/alkyl interactions (n) | H-bond interactions <3 Å (n) | Van der Waals contacts (n) | σ/π-π interactions (n) |
| Carvacrol | 0 | 4Val78, Phe79 Val86, Phe77 | 0 | 0 | 6His2028, Glu2033, Tyr2104, Arg2106, Glu2032, His2106 | 7Phe2108, Leu2031, Tyr2105, Trp2101, Ser2035 |
| Rapamycin | 6Arg73, Tyr113, Ile87, Asp68, Gln85, Gly84 | 8Val78, Phe79, Leu128, Gly59, Lys121, Phe130, Lys88, Ser118 | 10Ile122, Phe67, Tyr57, Trp90, Val86, Phe77 | 0 | 8His2028, Glu2033, Tyr2104, Leu2097, Gln2099, Trp2101, Tyr2038, Arg2036 | 4Phe2108, Leu2031, Tyr2105, Phe2039 |