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. 2020 Nov 3;9(11):giaa117. doi: 10.1093/gigascience/giaa117

Table 1:

Statistics for the 10 largest transcriptomic compendia found in refine.bio

Species No. experiments No. samples
Median Total
Homo sapiens 15,440 12 571,862
Mus musculus 13,224 10 296,829
Arabidopsis thaliana 1,627 9 24,855
Rattus norvegicus 1,368 12 38,530
Drosophila melanogaster 853 9 17,836
Saccharomyces cerevisiae 627 12 12,972
Danio rerio 546 9.5 28,518
Caenorhabditis elegans 375 10 7,953
Sus scrofa 280 12 6,063
Zea mays 274 5 3,458

The refine.bio meta-repository contains publicly available expression data from the SRA [20], Gene Expression Omnibus (GEO) [21], and ArrayExpress [22]. Public data usually have only a modest number of samples per experiment, although many samples are available in aggregate.