Table 1.
For each of the seven clusters we give the three most enriched GO terms and the multiple-testing-corrected p-values that we received from Fisher’s exact tests. For these GO terms, we also give the fold-enrichment as the fraction of genes in the module with this annotation over the total number of genes with this annotation in the whole data set
| Cluster | Module sizeM | Top enriched GO terms (fold-enrichment) | log10(p-value) |
|---|---|---|---|
| H1 | 51 | translational initiation (15/158) | −6 |
| nuclear-transcribed mRNA catabolic process (14/101) | −6 | ||
| SRP-dependent cotranslational protein targeting to membrane (14/90) | −5 | ||
| H2 | 52 | response to stress (32/491) | −2 |
| defense response (19/200) | −2 | ||
| cell maturation (6/18) | −2 | ||
| H3 | 27 | SRP-dependent cotranslational protein targeting to membrane (24/78) | −26 |
| nuclear-transcribed mRNA catabolic process (24/86) | −26 | ||
| translational initiation (24/105) | −24 | ||
| H4 | 3 | none | |
| H5 | 30 | extracellular structure organization (9/25) | −3 |
| exocytosis (12/203) | −2 | ||
| alcohol metabolic process (9/69) | −3 | ||
| H6 | 1 | none | |
| H7 | 253 | SRP-dependent cotranslational protein targeting to membrane (78/88) | −26 |
| nuclear-transcribed mRNA catabolic process (78/90) | −26 | ||
| cotranslational protein targeting to membrane (78/91) | −26 |