Table 1. Arabidopsis class II HDACs oligomerization and enzyme kinetics.
Proteins | Oligomer State | [E] | Vmax | Km | kcat | kcat/Km |
---|---|---|---|---|---|---|
nm | μm s−1 | μm | S−1 | μm−1 S−1 | ||
Wild type | ||||||
HDA5HD | Monomer | 25 | 0.65 ± 0.06 | 91.5 ± 26.0 | 26 ± 2.4 | 0.28 |
HDA18HD | Monomer | 25 | 0.25 ± 0.01 | 47.7 ± 7.63 | 10 ± 0.4 | 0.2 |
HDA15HD | Monomer | 75 | 2.31 ± 0.85 | 13.95 ± 4.15 | 30.82 ± 11.28 | 2.22 |
HDA15HD | Tetramer | 25 | 1.02 ± 0.13 | 6.09 ± 1.49 | 40.73 ± 5.32 | 7.37 |
HDA15ZFHD | Dimer | 2.5 | 3.9 ± 0.49 | 13.75 ± 0.89 | 1558.08 ± 97.71 | 113.78 |
Interface mutation | ||||||
HDA15ZFHD E163A | Dimer | 2.5 | 3.01 ± 0.2 | 20.02 ± 4.24 | 1205.83 ± 79.5 | 63.35 |
HDA15ZFHD E165A | Dimer | 2.5 | 3.42 ± 0.45 | 14.5 ± 1.87 | 1367.99 ± 79.66 | 95.61 |
HDA15ZFHD Q169A | Dimer | 2.5 | 3.09 ± 0.15 | 19.02 ± 0.99 | 1236.56 ± 58.84 | 65.25 |
HDA15ZFHD Y228A | Dimer | 2.5 | 3.25 ± 0.14 | 18.59 ± 3.39 | 1299.43 ± 57.21 | 71.83 |
HDA15ZFHD Y230A | Dimer | 2.5 | 2.41 ± 0.25 | 21.94 ± 3.25 | 964.74 ± 99.34 | 44.45 |
HDA15ZFHD Y228Y230A | Monomer | 2.5 | 1.93 ± 0.03 | 35.65 ± 4.56 | 772.95 ± 11.58 | 22.02 |
HDA15ZFHD E173A | Monomer | 25 | 1.49 ± 0.45 | 26.29 ± 6.83 | 59.42 ± 17.85 | 2.3 |
HDA15ZFHD R177A | Monomer | 625 | 2.39 ± 0.15 | 75.32 ± 24.64 | 3.83 ± 0.24 | 0.06 |
Phosphorylation mutation | ||||||
HDA15ZFHD S448D | Monomer | 25 | 4.48 ± 0.14 | 13.35 ± 1.5 | 179.2 ± 5.6 | 13.42 |
Dimer | 2.5 | 2.58 ± 0.16 | 35.48 ± 5.04 | 1032 ± 64 | 29.08 | |
HDA15ZFHD S452D | Monomer | 25 | 5.26 ± 0.12 | 11.71 ± 1.0 | 210.4 ± 4.8 | 17.96 |
Dimer | 2.5 | 3.08 ± 0.08 | 11.65 ± 1.32 | 1232 ± 32 | 105.75 | |
HDA15ZFHD S448S452D | Monomer | 25 | 3.89 ± 0.17 | 27.39 ± 3.1 | 155.6 ± 6.8 | 5.68 |
Dimer | 25 | 3.5 ± 0.09 | 21.17 ± 1.69 | 140 ± 3.6 | 6.61 | |
HDA15ZFHD S448A | Dimer | 2.5 | 4.52 ± 0.17 | 18.12 ± 2.16 | 1808 ± 68 | 99.78 |
HDA15ZFHD S452A | Dimer | 2.5 | 4.69 ± 0.12 | 12.13 ± 1.27 | 1876 ± 48 | 154.66 |
HDA15ZFHD S448S452A | Dimer | 2.5 | 4.68 ± 0.2 | 17.58 ± 2.44 | 1872 ± 80 | 106.48 |