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. 2020 Sep 2;184(3):1585–1600. doi: 10.1104/pp.20.00604

Table 1. Arabidopsis class II HDACs oligomerization and enzyme kinetics.

Proteins Oligomer State [E] Vmax Km kcat kcat/Km
nm μm s−1 μm S−1 μm−1 S−1
Wild type
 HDA5HD Monomer 25 0.65 ± 0.06 91.5 ± 26.0 26 ± 2.4 0.28
 HDA18HD Monomer 25 0.25 ± 0.01 47.7 ± 7.63 10 ± 0.4 0.2
 HDA15HD Monomer 75 2.31 ± 0.85 13.95 ± 4.15 30.82 ± 11.28 2.22
 HDA15HD Tetramer 25 1.02 ± 0.13 6.09 ± 1.49 40.73 ± 5.32 7.37
 HDA15ZFHD Dimer 2.5 3.9 ± 0.49 13.75 ± 0.89 1558.08 ± 97.71 113.78
Interface mutation
 HDA15ZFHD E163A Dimer 2.5 3.01 ± 0.2 20.02 ± 4.24 1205.83 ± 79.5 63.35
 HDA15ZFHD E165A Dimer 2.5 3.42 ± 0.45 14.5 ± 1.87 1367.99 ± 79.66 95.61
 HDA15ZFHD Q169A Dimer 2.5 3.09 ± 0.15 19.02 ± 0.99 1236.56 ± 58.84 65.25
 HDA15ZFHD Y228A Dimer 2.5 3.25 ± 0.14 18.59 ± 3.39 1299.43 ± 57.21 71.83
 HDA15ZFHD Y230A Dimer 2.5 2.41 ± 0.25 21.94 ± 3.25 964.74 ± 99.34 44.45
 HDA15ZFHD Y228Y230A Monomer 2.5 1.93 ± 0.03 35.65 ± 4.56 772.95 ± 11.58 22.02
 HDA15ZFHD E173A Monomer 25 1.49 ± 0.45 26.29 ± 6.83 59.42 ± 17.85 2.3
 HDA15ZFHD R177A Monomer 625 2.39 ± 0.15 75.32 ± 24.64 3.83 ± 0.24 0.06
Phosphorylation mutation
 HDA15ZFHD S448D Monomer 25 4.48 ± 0.14 13.35 ± 1.5 179.2 ± 5.6 13.42
Dimer 2.5 2.58 ± 0.16 35.48 ± 5.04 1032 ± 64 29.08
 HDA15ZFHD S452D Monomer 25 5.26 ± 0.12 11.71 ± 1.0 210.4 ± 4.8 17.96
Dimer 2.5 3.08 ± 0.08 11.65 ± 1.32 1232 ± 32 105.75
 HDA15ZFHD S448S452D Monomer 25 3.89 ± 0.17 27.39 ± 3.1 155.6 ± 6.8 5.68
Dimer 25 3.5 ± 0.09 21.17 ± 1.69 140 ± 3.6 6.61
 HDA15ZFHD S448A Dimer 2.5 4.52 ± 0.17 18.12 ± 2.16 1808 ± 68 99.78
 HDA15ZFHD S452A Dimer 2.5 4.69 ± 0.12 12.13 ± 1.27 1876 ± 48 154.66
 HDA15ZFHD S448S452A Dimer 2.5 4.68 ± 0.2 17.58 ± 2.44 1872 ± 80 106.48