| Deposited Data |
|
| human developmental time-series for the brain, cerebellum, heart, kidney, liver, ovary and testis |
Cardoso-Moreira et al., 2019 |
ArrayExpress: E-MTAB-6814 |
| rhesus macaque developmental time-series for the brain, cerebellum, heart, kidney, liver, ovary and testis |
Cardoso-Moreira et al., 2019 |
ArrayExpress: E-MTAB-6813 |
| mouse developmental time-series for the brain, cerebellum, heart, kidney, liver, ovary and testis |
Cardoso-Moreira et al., 2019 |
ArrayExpress: E-MTAB-6798 |
| rat developmental time-series for the brain, cerebellum, heart, kidney, liver, ovary and testis |
Cardoso-Moreira et al., 2019 |
ArrayExpress: E-MTAB-6811 |
| rabbit developmental time-series for the brain, cerebellum, heart, kidney, liver, ovary and testis |
Cardoso-Moreira et al., 2019 |
ArrayExpress: E-MTAB-6782 |
|
| Software and Algorithms |
|
| WGCNA (1.61) |
Langfelder and Horvath, 2008 |
https://horvath.genetics.ucla.edu/html/CoexpressionNetwork/Rpackages/WGCNA/ |
| DESeq2 (1.12.4) |
Love et al., 2014 |
https://bioconductor.org/packages/release/bioc/html/DESeq2.html |
| WebGestalt (0.0.5) |
Wang et al., 2017 |
https://cran.r-project.org/web/packages/WebGestaltR/index.html |
| mFuzz (2.32.0) |
Futschik and Carlisle, 2005;
Kumar and Futschik, 2007
|
https://www.bioconductor.org/packages/release/bioc/html/Mfuzz.html |
| GPClust |
Hensman et al., 2012, 2013, 2015
|
https://github.com/SheffieldML/GPclust |
| R (3.3.2) |
R Core Team, 2014 |
https://www.r-project.org/ |
| ggplot2 (2.2.1) |
Wickham, 2009 |
https://cran.r-project.org/web/packages/ggplot2/index.html |
| gridExtra (2.2.1) |
Auguie, 2016 |
https://cran.r-project.org/web/packages/gridExtra/index.html |
| reshape2 (1.4.2) |
Wickham, 2007 |
https://cran.r-project.org/web/packages/reshape2/index.html |
| plyr (1.8.4) |
Wickham, 2011 |
https://cran.r-project.org/web/packages/plyr/index.html |
| factoextra (1.0.4) |
Kassambara and Mundt, 2017 |
https://cran.r-project.org/web/packages/factoextra/index.html |
| tidyverse (1.2.1) |
Wickham, 2017 |
https://cran.r-project.org/web/packages/tidyverse/index.html |
