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. Author manuscript; available in PMC: 2021 Mar 24.
Published in final edited form as: Nat Genet. 2020 Apr 13;52(5):534–540. doi: 10.1038/s41588-020-0612-7

Figure 4. SNP- and k-mer-based GWAS in maize.

Figure 4

(A) Overlap between SNP and k-mer hits. See also Extended Data Fig. 8B,C.

(B) Correlation of numbers of significant k-mers vs. SNPs. See also Extended Data Fig. 8E.

(C) Correlation of p-values of top k-mers and SNPs.

(D) SNP associations with days to tassel (environment 06FL1).

(E) LD between 23 significant SNPs and 18 k-mers (top) or k-mers to k-mers (bottom) for days to tassel. Order of k-mers is the same in both heatmaps.

(F) LD between 45 k-mers associated with ear weight (environment 07A, left), and k-mer presence/absence patterns in different accessions ordered by their ear weight (right).