Table 1. Conopeptide gene superfamilies.
Gene superfamily | # Protein precursorsb | # Nucleic sequencesb | Cysteine frameworks occurring in superfamily | Consensus of signal peptide sequencec |
---|---|---|---|---|
A | 202 | 234 | I, II, IV, XIV | MGMRMMFTVFLLVVLATTVVSXTS |
B1 | 14 | 5 | (disulfide poor conantokins) | MXLYTYLYLLVPLVTFHLILGXGT |
B2 | 1 | VIII | MLRLITAAVLVSACLA | |
B3 | 1 | 1 | XXIV | METLTLLWRASSSCLLVVLSHSLLRLLG |
C | 4 | 7 | (disulfide poor contulakins) | MXXAYWVMVMMMVXIXAPLSEG |
D | 28 | 14 | XV, XX | MPKLEMMLLVLLILPLXYFDAAGG |
E | 1 | XXII | MMTRVFFAMFFLMALTEG | |
F | 1 | MQRGAVLLGVVALLVLWPQAGA | ||
G | 1 | 1 | XIII | MSGMGVLLLVLLLVMPLAA |
H | 7 | VI/VII | MNTAGRLLLLCLALGVLVFESLG | |
I1 | 17 | 10 | VI/VII, XI | MKLXXTFLLXLXILPXXXG |
I2 | 57 | 38 | XI, XII | MMFRXTSVXCFLLVIXXLNL |
I3 | 7 | 8 | VI/VII, XI | MKLVLAIVXILMLLSLSTGA |
J | 12 | 12 | XIV | MPSVRSVTCCCLLWXMLSXXLVTPGSP |
K | 4 | 1 | XXIII | MIMRMTLTLFVLVVMTAASASG |
L | 13 | 8 | XIV | MXXXVMFXVXLXLTMPLTX |
M | 361 | 333 | I, II, III, IV, VI/VII, IX, X, XIV, XVI | MMXKXGVXMLXIXLXLFPLXXXQLDA |
N | 3 | XV | MSTLKMMLLILLLLLPXATFDSDG | |
O1 | 460 | 559 | I, VI/VII, XII, XIV | MMKLTCVXIVAVLFLTAXXLXTAXXSA |
O2 | 84 | 73 | VI/VII, XIV, XV | MEKLTILLLVAAVLMSTQALXQS |
O3 | 28 | 22 | VI/VII | MSGLGIMVLTLLLLVFMXTSHQ |
P | 9 | 5 | IX | MHXXLXXSAVLXLXLLXAXXNFXXVQ |
S | 13 | 8 | VIII | MMXKMGAMFVLLLLFXLXSSQQ |
T | 157 | 143 | I, V, X, XVI | MRCLPVFXILLLLIXSAPSVDA |
V | 2 | 2 | XV | MMPVILLLLLSLAIRXXDG |
Y | 1 | 1 | XVII | MQKATVLLLALLLLLPLSTA |
Conopeptides gene superfamilies are defined by the similarity of the signal peptide regions in conopeptide precursors. The founding reference for each superfamily can be found on the ConoServer website (http://www.conoserver.org), which also provides regular updates to this table and additional statistics. Definitions of the cysteine frameworks are in Table 2.
Number of protein and nucleic precursors catalogued in ConoServer.
The consensus signal sequence was obtained by establishing determining amino acids with at least 60% of conservation at each position of the signal sequence in all protein precursors in ConoServer.