Table 2.

Example configurations for different experiment types. “Unblock” causes a read to be ejected from the pore, “proceed” means that a read continues to sequence and serve data through the API for later decisions, “stop receiving” allows the read to continue sequencing with no further data served through the API.

Experiment Type	Region of Interest for Alignments	Mapping Condition
		multi_on	multi_off	single_on	single_off	no_map	no_seq
Host Depletion	Known Host Genome	unblock	proceed	unblock	proceed	proceed	proceed
Targeted Sequencing	Known regions from one or more genomes.	stop receiving	proceed	stop receiving	unblock	proceed	proceed
Target Coverage Depth (known sample composition)	All known genomes within the sample, tracked for coverage depth.	stop receiving	proceed	stop receiving	unblock	proceed	proceed
Low Abundance Enrichment (unknown sample composition)	All genomes within the sample that can be identified as well as those that cannot.	stop receiving	proceed	stop receiving	unblock	proceed	proceed