Table 1. Data collection and refinement statistics.
| Parameter | Holo 1116NS19.9 | Apo 1116NS19.9 | Holo 5b1 | Apo 5b1 | AbLIFT-15 |
|---|---|---|---|---|---|
| PDB ID | 6XTG | 6XUD | 6XUN | 6XUL | 6XUK |
| Wavelength (Å) | 0.97242 | 0.97242 | 0.87313 | 0.87313 | 0.97371 |
| Space group | P 21 21 2 | P 41 21 2 | P 31 | P 32 | P 43 21 2 |
| Cell dimensions | |||||
| a, b, c (Å) | 89.17 60.20 84.44 | 64.92 64.92 242.6 | 152.54 152.54 60.89 | 155.01 155.01 121.78 | 64.93 64.93 244.9 |
| α, β, γ ° | 90 90 90 | 90 90 90 | 90 90 120 | 90 90 120 | 90 90 90 |
| Resolution (Å) | 44.58-1.55 | 45.9-1.51 | 47.58-2.41 | 46.84-2.41 | 62.75-1.42 |
| (1.60-1.55)a | (1.56-1.51)a | (2.48-2.41)a | (2.50-2.41)a | (1.47-1.42)a | |
| Rmeas (%) | 5.9 (158)a | 13.4 (103.1)a | 17.42 (90.17)a | 19.24 (103.8)a | 10.85 (111.8)a |
| CC1/2 | 99.9 (56.8)a | 99.6 (79.2)a | 99.1 (67.9)a | 98.3 (53.3)a | 99.6 (57.7)a |
| I/σI | 13 (1.1)a | 9.4 (2.3)a | 6.62 (1.81)a | 5.58 (1.35)a | 9.4 (2.3)a |
| Completeness (%) | 95 (95.2)a | 99.9 (100)a | 99.76 (98.2)a | 99.70 (99.9)a | 99.89 (99.6)a |
| Multiplicity | 2.9 (3)a | 9.1 (9.4)a | 5.1 (5.2)a | 3.5 (3.5)a | 6.1 (5.6)a |
| Reflections | 359,539 | 753,716 | 309,763 | 446,316 | 610,565 |
| Unique reflections | 64,876 | 82,652 | 61,168 | 126,376 | 99,646 |
| Refinement | |||||
| Resolution (Å) | 44.58-1.55 | 45.32-1.51 | 47.58-2.41 | 46.84-2.41 | 62.75-1.42 |
| No. of reflections | 64,837 | 82,525 | 61,030 | 126,037 | 99,619 |
| Rwork/Rfree(%) | 17.39/20.13 | 14.69/ 17.32 | 16.99/21.34 | 16.78/22.95 | 14.9/18.49 |
| No. of atoms | |||||
| Protein | 3356 | 3361 | 9978 | 19,904 | 3312 |
| Ligand/ion | 57 | - | 192 | - | 68 |
| Water | 382 | 643 | 485 | 1022 | 661 |
| B factors | |||||
| Protein | 38.67 | 21.43 | 45.35 | 49.5 | 20.16 |
| Ligand/ion | 33.85 | - | 44.92 | - | 23.93 |
| Water | 45.09 | 35.81 | 44.41 | 46.33 | 34.20 |
| Ramachandran | |||||
| Favored (%) | 98.12 | 98.83 | 97.60 | 96.54 | 98.12 |
| Allowed (%) | 1.88 | 1.17 | 2.32 | 3.34 | 1.41 |
| Outlier (%) | 0.0 | 0.0 | 0.08 | 0.12 | 0.47 |
| RMSD | |||||
| Bond length (Å) | 0.006 | 0.008 | 0.006 | 0.008 | 0.013 |
| Bond angles ° | 0.733 | 0.995 | 1.17 | 1.22 | 1.65 |
Values in parentheses are for the highest resolution-shell.