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. Author manuscript; available in PMC: 2022 Jul 2.
Published in final edited form as: Mol Ecol Resour. 2021 Jun 19;22(1):28–44. doi: 10.1111/1755-0998.13436

Figure 2. Amplicon sequence recall and variation.

Figure 2

(a) Amplicon recovery across Anopheles species in 135 sequenced samples and 28 reference genomes, dots correspond to individual samples; colours indicate lineages of Anopheles genus. (b) Allele counts per sample for 135 sequenced samples across 62 amplicons. (c) Number of unique sequences in the alignment of sequenced data and reference genomes across 62 amplicons. (d) Number of gaps in the alignment of sequenced data and reference genomes across 62 amplicons; values averaged across aligned unique sequences. Vertical lines in b, d, and d denote chromosome arms (An. gambiae: 2L, 2R, 3L, 3R, X). Colour in c and d indicates amplicon position relative to AgamP3 genes