RPFdb v2.0 |
An open-source repository of ribosome profiling data sets |
http://sysbio.gzzoc.com/rpfdb/
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H. Wang et al. (2019)
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CircPro |
A tool to identify protein-coding circRNAs using Ribo-Seq data |
http://bis.zju.edu.cn/CircPro/
|
Meng et al. (2017)
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CircCode |
An advanced command-line-based tool to identify the coding circRNAs |
https://github.com/PSSUN/CircCode
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Sun & Li (2019)
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Rcirc |
R package for detecting circRNAs and their coding potential |
https://github.com/PSSUN/Rcirc
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Sun et al. (2020)
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ORF Finder |
Finds all possible ORFs in a given sequence |
https://www.ncbi.nlm.nih.gov/orffinder/
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CPC2 |
Determine the protein-coding potential of a given transcript |
http://cpc2.cbi.pku.edu.cn
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Kang et al. (2017)
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CPAT |
An align-free algorithm to analyze the coding potential of a given sequence |
http://code.google.com/p/cpat/
|
L. Wang et al. (2013)
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PhyloCSF |
Identify conserved protein-coding sequences |
http://compbio.mit.edu/PhyloCSF
|
Lin et al. (2011)
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TISdb |
Database of TIS positions and ORFs based on GTI-seq data |
http://tisdb.human.cornell.edu/
|
Wan and Qian (2014)
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preTIS |
Identify non-canonical translation initiation sites in the 5' UTR |
http://service.bioinformatik.uni-saarland.de/pretis
|
Reuter et al. (2016)
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TITER |
Identify all ORFs with AUG as well as non-AUG start codons |
https://github.com/zhangsaithu/titer
|
S. Zhang et al. (2017)
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IRESite |
Database of experimentally validated viral and cellular IRES regions |
http://www.iresite.org
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Mokrejs et al. (2010)
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IRESbase |
Database of experimentally verified IRES elements |
http://reprod.njmu.edu.cn/cgi-bin/iresbase/index.php
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Zhao et al. (2020)
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REPIC |
A database of N6-methyladenosine modifications |
https://repicmod.uchicago.edu/repic/
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S. Liu et al. (2020)
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circAtlas |
Database of circRNAs with IRES and ORF information |
http://circatlas.biols.ac.cn/
|
W. Wu et al. (2020)
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circBank |
Database of human circRNAs m6A and proteincoding potential information |
http://www.circbank.cn/
|
M. Liu et al. (2019)
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circRNADb |
Database of human circRNAs that includes information about translatable circRNAs |
http://reprod.njmu.edu.cn/circrnadb
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X. Chen et al. (2016)
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TransCirc |
A database of human circRNAs with protein-coding potential |
https://www.biosino.org/transcirc/
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W. Huang et al. (2021)
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riboCirc |
Database of translatable circRNAs and their encoded proteins |
http://www.ribocirc.com/index.html
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H. Li et al. (2021)
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