REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Sheep anti-CGRP (1:400) | Enzo Life | Cat# BML-CA1137; RRID: AB_2050885 |
Rabbit anti-CGRP (1:1000) | Peninsula Laboratories | Cat# T-4032; RRID: AB_2313775 |
Isolectin B4 (IB4), conjugated to biotin (1:100) | Sigma-Aldrich | Cat# L2140; RRID: AB_2313663 |
Mouse anti-NF200 (1:250) | Sigma-Aldrich | Cat# N0142; RRID: AB_477257 |
Rabbit anti-NCX3 (1:1000) | Swant | Cat# 95209 |
Chicken anti-NeuN (1:500) | Millipore | Cat# ABN91; RRID: AB_11212808 |
Sheep anti-Tyrosine Hydroxylase (1:200) | Millipore | Cat# AB1542; RRID: AB_90755 |
Chicken anti-GFP (1:1000) | Abcam | Cat# ab13970; RRID: AB_300798 |
GAPDH (1:1000) | Abcam | Cat# ab181602 |
Donkey anti-rabbit IgG Alexa 488 (1:1000) | Thermo Fisher Scientific | Cat# A-21206; RRID: AB_2535792 |
Streptavidin Pacific Blue (1:500) | Thermo Fisher Scientific | Cat# S11222 |
Donkey anti-mouse IgG Alexa 488 (1:1000) | Thermo Fisher Scientific | Cat# A-21202; RRID: AB_141607 |
Goat anti-mouse IgG Pacific blue (1:500) | Thermo Fisher Scientific | Cat# P31582; RRID: AB_10374586 |
Donkey anti-sheep IgG Alexa 488 (1:1000) | Thermo Fisher Scientific | Cat# A-11015; RRID: AB_2534082 |
Goat anti-chicken Alexa 488 (1:1000) | Thermo Fisher Scientific | Cat# 11039; RRID: AB_2534096 |
Anti-rabbit HRP-conjugated (1:5000) | Fisher Scientific | Cat# NA934VS |
Anti-mouse HRP-conjugated (1:10000) | Fisher Scientific | Cat# NA931VS |
Bacterial and virus strains | ||
ssAAV-1/2-shortCAG-mSlc8a3_myc_FLAG-WPRE-SV40p(A) (capsid 1) | VVF - custom | This paper |
ssAAV-1/2-shortCAG-EGFP-WPRE-SV40p(A) (capsid 1) | VVF - repository | Cat# v587-1 |
Chemicals, peptides, and recombinant proteins | ||
Formaldehyde solution | Sigma-Aldrich | Cat# 252549 |
Ionomycin | Sigma-Aldrich | Cat# I0634-1MG |
Critical commercial assays | ||
RNAscope 2.5 HD Reagent Kit-RED | Biotechne | Cat# 322350 |
RNAscope® Fluorescent Multiplex Detection Reagent kit | Biotechne | Cat# 320851 |
LightCycler 480 SYBR Green Master mix | Roche | Cat# 04707516001 |
In Fusion® Cloning kit | Takara Bio | Cat# 638909 |
Jet PEI DNA Transfection Reagent | Polyplus Transfection | Cat# 101-10N |
Deposited data | ||
Raw data showing Ca2+ imaging selection protocol and decay kinetics analysis | https://github.com/Teodora-trend/calcium_imaging | https://doi.org/10.5281/zenodo.6529629 |
Experimental models: Cell lines | ||
HEK-293 | N/A | N/A |
Experimental models: Organisms/strains | ||
Slc8a3tm1Sso mouse line | Sokolow et al., 2004 | N/A |
Gad67-EGFP mouse line | Tamamaki et al., 2003 | Tissue from Professor H. Zeilhofer |
GlyT2-eGFP mouse line | Zeilhofer et al., 2005 | Tissue from Professor H. Zeilhofer |
vGluT2-eGFP mouse line | Gong et al., 2003 | Tissue from Professor H. Zeilhofer |
Phox2aCre x Rosa26LSL-tdTomato | Tissue from Professor A. Todd | |
C57Bl/6J mouse line used for spinal injections | Charles River | Strain code 632 |
Oligonucleotides | ||
NCX3_F CAGATAAGCGACTGCTCTTC |
Thermo Fisher Scientific | Sokolow et al., 2004 |
NCX3_R CCTGGCTTCAGAACCACAGTG |
Thermo Fisher Scientific | Sokolow et al., 2004 |
NCX3_Neo TCGACTAGAGGATCAGCTT |
Thermo Fisher Scientific | Sokolow et al., 2004 |
NCX3-AC_F GGGCCCCCGCATGGTGGATA |
Thermo Fisher Scientific | Michel et al., 2014 |
NCX3-AC_R CAGCTTCCTGTCTGTCACTTCTGGA |
Thermo Fisher Scientific | Michel et al., 2014 |
NCX3-B_F GCATATGGGGAGCTGGAGT |
Thermo Fisher Scientific | Michel et al., 2014 |
NCX3-B_R GTTCACCAAGGGCAATGAAG. |
Thermo Fisher Scientific | Michel et al., 2014 |
Cloning Oligo 1 (BamHI) (Insert 1) Forward GCAAAGAATTGGATCCGCCACCATG GCGTGGTTA |
Thermo Fisher Scientific | This paper |
Cloning Oligo 2 (Insert 1) (EcoRI) Reverse GCTTGATATCGAATTCTTAAACCTTATC GTCGTCATCCTTG |
Thermo Fisher Scientific | This paper |
RNAscope® Probe- Mm-Slc8a3 | Biotechne | Cat# 523681 |
RNAscope® Probe- Mm-Lypd1 | Biotechne | Cat# 318361-C2 |
RNAscope® Probe- Mm-tdTomato | Biotechne | Cat# 317041-C2 |
Recombinant DNA | ||
pAAV CAG-GFP | From Edward Boyden (Addgene plasmid # 37825; http://n2t.net/addgene:37825) | RRID: Addgene_37825 |
Slc8a3-B (Myc-DDK-tagged) | Origene | Cat# MR211189 |
Software and algorithms | ||
Plink software for genetic data analysis and GWAS | Chang et al., 2015 | https://www.cog-genomics.org/plink/1.9/ |
R statistical software | https://cran.r-project.org/ | |
FastMan package for R for manhattan plot visualization | Paria et al., 2022 | https://github.com/kaustubhad/fastman |
R package for GWAS power calculation | Schmid et al., 2019 | https://github.com/kaustubhad/gwas-power |
SHAPEIT2 software for genetic data phasing | O’Connell et al., 2014 | https://mathgen.stats.ox.ac.uk/genetics_software/shapeit/shapeit.html |
IMPUTE2 software for genotype imputation | Howie et al., 2012 | https://mathgen.stats.ox.ac.uk/impute/impute_v2.html |
ADMIXTURE software for genetic ancestry estimation | Alexander et al., 2009 | http://dalexander.github.io/admixture/ |
GCTA software for gene-level association GCTA-fastBATtest | Bakshi et al., 2016 | https://cnsgenomics.com/software/gcta/#Gene-basedtest |
Illumina GenomeStudio software for genotype calling | https://www.illumina.com/techniques/microarrays/array-data-analysis-experimental-design/genomestudio.html | |
GraphPad Prism 9 | GraphPad | https://www.graphpad.com/ |
ImageJ | National Institutes of Health | https://imagej.nih.gov/ij/ |
FIJI software for pixel-based color quantification | FIJI | https://imagej.net/Fiji |
Avidemux | Avidemux | https://avidemux.en.softonic.com/mac |
Microsoft Excel | Microsoft | https://www.microsoft.com/en-gb/ |
Matlab | Mathworks | https://uk.mathworks.com/products/matlab.html |
BioRender | https://biorender.com | |
Neurolucida | MBF Bioscience | https://www.mbfbioscience.com/neurolucida-version-2020 |
Other | ||
GWAS summary statistics from the CANDELA cohort | GWAS Central | https://www.gwascentral.org/study/HGVST3308 |
GTEx expression data for SLC8A3 | GTEx | https://www.gtexportal.org/home/gene/SLC8A3 |
GTEx expression data for S100A16 | GTEx | https://www.gtexportal.org/home/gene/S100A16 |
ENCODE expression data for SLC8A3 | ENCODE | https://screen.wenglab.org/geApp/?assembly=GRCh38&gene=SLC8A3 |