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. 2022 Aug 17;110(16):2571–2587.e13. doi: 10.1016/j.neuron.2022.05.017
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Sheep anti-CGRP (1:400) Enzo Life Cat# BML-CA1137; RRID: AB_2050885
Rabbit anti-CGRP (1:1000) Peninsula Laboratories Cat# T-4032; RRID: AB_2313775
Isolectin B4 (IB4), conjugated to biotin (1:100) Sigma-Aldrich Cat# L2140; RRID: AB_2313663
Mouse anti-NF200 (1:250) Sigma-Aldrich Cat# N0142; RRID: AB_477257
Rabbit anti-NCX3 (1:1000) Swant Cat# 95209
Chicken anti-NeuN (1:500) Millipore Cat# ABN91; RRID: AB_11212808
Sheep anti-Tyrosine Hydroxylase (1:200) Millipore Cat# AB1542; RRID: AB_90755
Chicken anti-GFP (1:1000) Abcam Cat# ab13970; RRID: AB_300798
GAPDH (1:1000) Abcam Cat# ab181602
Donkey anti-rabbit IgG Alexa 488 (1:1000) Thermo Fisher Scientific Cat# A-21206; RRID: AB_2535792
Streptavidin Pacific Blue (1:500) Thermo Fisher Scientific Cat# S11222
Donkey anti-mouse IgG Alexa 488 (1:1000) Thermo Fisher Scientific Cat# A-21202; RRID: AB_141607
Goat anti-mouse IgG Pacific blue (1:500) Thermo Fisher Scientific Cat# P31582; RRID: AB_10374586
Donkey anti-sheep IgG Alexa 488 (1:1000) Thermo Fisher Scientific Cat# A-11015; RRID: AB_2534082
Goat anti-chicken Alexa 488 (1:1000) Thermo Fisher Scientific Cat# 11039; RRID: AB_2534096
Anti-rabbit HRP-conjugated (1:5000) Fisher Scientific Cat# NA934VS
Anti-mouse HRP-conjugated (1:10000) Fisher Scientific Cat# NA931VS

Bacterial and virus strains

ssAAV-1/2-shortCAG-mSlc8a3_myc_FLAG-WPRE-SV40p(A) (capsid 1) VVF - custom This paper
ssAAV-1/2-shortCAG-EGFP-WPRE-SV40p(A) (capsid 1) VVF - repository Cat# v587-1

Chemicals, peptides, and recombinant proteins

Formaldehyde solution Sigma-Aldrich Cat# 252549
Ionomycin Sigma-Aldrich Cat# I0634-1MG

Critical commercial assays

RNAscope 2.5 HD Reagent Kit-RED Biotechne Cat# 322350
RNAscope® Fluorescent Multiplex Detection Reagent kit Biotechne Cat# 320851
LightCycler 480 SYBR Green Master mix Roche Cat# 04707516001
In Fusion® Cloning kit Takara Bio Cat# 638909
Jet PEI DNA Transfection Reagent Polyplus Transfection Cat# 101-10N

Deposited data

Raw data showing Ca2+ imaging selection protocol and decay kinetics analysis https://github.com/Teodora-trend/calcium_imaging https://doi.org/10.5281/zenodo.6529629

Experimental models: Cell lines

HEK-293 N/A N/A

Experimental models: Organisms/strains

Slc8a3tm1Sso mouse line Sokolow et al., 2004 N/A
Gad67-EGFP mouse line Tamamaki et al., 2003 Tissue from Professor H. Zeilhofer
GlyT2-eGFP mouse line Zeilhofer et al., 2005 Tissue from Professor H. Zeilhofer
vGluT2-eGFP mouse line Gong et al., 2003 Tissue from Professor H. Zeilhofer
Phox2aCre x Rosa26LSL-tdTomato Tissue from Professor A. Todd
C57Bl/6J mouse line used for spinal injections Charles River Strain code 632

Oligonucleotides

NCX3_F
CAGATAAGCGACTGCTCTTC
Thermo Fisher Scientific Sokolow et al., 2004
NCX3_R
CCTGGCTTCAGAACCACAGTG
Thermo Fisher Scientific Sokolow et al., 2004
NCX3_Neo
TCGACTAGAGGATCAGCTT
Thermo Fisher Scientific Sokolow et al., 2004
NCX3-AC_F
GGGCCCCCGCATGGTGGATA
Thermo Fisher Scientific Michel et al., 2014
NCX3-AC_R
CAGCTTCCTGTCTGTCACTTCTGGA
Thermo Fisher Scientific Michel et al., 2014
NCX3-B_F
GCATATGGGGAGCTGGAGT
Thermo Fisher Scientific Michel et al., 2014
NCX3-B_R
GTTCACCAAGGGCAATGAAG.
Thermo Fisher Scientific Michel et al., 2014
Cloning Oligo 1 (BamHI) (Insert 1) Forward
GCAAAGAATTGGATCCGCCACCATG
GCGTGGTTA
Thermo Fisher Scientific This paper
Cloning Oligo 2 (Insert 1) (EcoRI) Reverse
GCTTGATATCGAATTCTTAAACCTTATC
GTCGTCATCCTTG
Thermo Fisher Scientific This paper
RNAscope® Probe- Mm-Slc8a3 Biotechne Cat# 523681
RNAscope® Probe- Mm-Lypd1 Biotechne Cat# 318361-C2
RNAscope® Probe- Mm-tdTomato Biotechne Cat# 317041-C2

Recombinant DNA

pAAV CAG-GFP From Edward Boyden (Addgene plasmid # 37825; http://n2t.net/addgene:37825) RRID: Addgene_37825
Slc8a3-B (Myc-DDK-tagged) Origene Cat# MR211189

Software and algorithms

Plink software for genetic data analysis and GWAS Chang et al., 2015 https://www.cog-genomics.org/plink/1.9/
R statistical software https://cran.r-project.org/
FastMan package for R for manhattan plot visualization Paria et al., 2022 https://github.com/kaustubhad/fastman
R package for GWAS power calculation Schmid et al., 2019 https://github.com/kaustubhad/gwas-power
SHAPEIT2 software for genetic data phasing O’Connell et al., 2014 https://mathgen.stats.ox.ac.uk/genetics_software/shapeit/shapeit.html
IMPUTE2 software for genotype imputation Howie et al., 2012 https://mathgen.stats.ox.ac.uk/impute/impute_v2.html
ADMIXTURE software for genetic ancestry estimation Alexander et al., 2009 http://dalexander.github.io/admixture/
GCTA software for gene-level association GCTA-fastBATtest Bakshi et al., 2016 https://cnsgenomics.com/software/gcta/#Gene-basedtest
Illumina GenomeStudio software for genotype calling https://www.illumina.com/techniques/microarrays/array-data-analysis-experimental-design/genomestudio.html
GraphPad Prism 9 GraphPad https://www.graphpad.com/
ImageJ National Institutes of Health https://imagej.nih.gov/ij/
FIJI software for pixel-based color quantification FIJI https://imagej.net/Fiji
Avidemux Avidemux https://avidemux.en.softonic.com/mac
Microsoft Excel Microsoft https://www.microsoft.com/en-gb/
Matlab Mathworks https://uk.mathworks.com/products/matlab.html
BioRender https://biorender.com
Neurolucida MBF Bioscience https://www.mbfbioscience.com/neurolucida-version-2020

Other

GWAS summary statistics from the CANDELA cohort GWAS Central https://www.gwascentral.org/study/HGVST3308
GTEx expression data for SLC8A3 GTEx https://www.gtexportal.org/home/gene/SLC8A3
GTEx expression data for S100A16 GTEx https://www.gtexportal.org/home/gene/S100A16
ENCODE expression data for SLC8A3 ENCODE https://screen.wenglab.org/geApp/?assembly=GRCh38&gene=SLC8A3