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. Author manuscript; available in PMC: 2023 Feb 1.
Published in final edited form as: New Phytol. 2022 Nov 8;237(4):1405–1417. doi: 10.1111/nph.18607

Table 1.

Hypothetical WGDs, posterior mean of duplicate retention rate (q), and the Bayes Factor (K) to compare the likelihood of q = 0 (H0) to the likelihood of q > 0 (H1) using the Savage-Dickey density ratio.

Hypotheses Relaxed branch-specific model Critical branch-specific model
q¯ K q¯ K
WGD1 0.001 1272.297 0.029 2.693
WGD2 0.028 2.649 0.058 0.393
WGD3 0.352 0.047** 0.263 0.061**
WGD4 0.170 0.197* 0.193 0.094**
WGD5 0.156 0.149* 0.006 128.480
WGD6 0.020 21.026 0.000 6919.539
WGD7 0.127 0.166* 0.142 0.135*
WGD8 0.025 12.864 0.027 6.007
**

K < 1/10 or K < 0.1, strong evidence against H0;

*

K < 1/100.5 or K < 0. 3162 substantial evidence against H0;

K < 1, H1 supported, not worth more than a bare mention; K > 1, H0 supported.