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. Author manuscript; available in PMC: 2023 Apr 7.
Published in final edited form as: Nat Ment Health. 2023 Jan 19;1(1):25–35. doi: 10.1038/s44220-022-00001-z

Table 2. Model comparisons including coefficients for development and external validation.

Model type Model Predictors of TRS Coefficients after shrinkage for optimism$ Pooled Development Sample performance statistics Shrinkage factor Validation Sample performance statistics Validation Sample
New coefficients after model recalibration
Validation Sample
Performance after model recalibration
Calibration plots for external validation
Forced-entry Intercept
Sex
Age
Black/African-Caribbean ethnicity
Asian ethnicity
Triglycerides
Alkaline phosphatase (ALP)
Lymphocyte count
-2.827381
0.286466741
-0.036205346
0.419614174
-0.144147329
0.149214138
0.006713513
0.131215526
C: 0.70 (0.63-0.76)
Brier score: 0.07
0.79 C: 0.63 (0.58-0.69)
Brier score: 0.08
Lymphocyte coefficient:
-0.695404405.
Intercept: -1.336220
Slope: 1.0519963
C: 0.67 (0.62-0.73)
Brier score: 0.08
Figure 2A and 2B
LASSO-based Intercept
Sex
Age
Black/African-Caribbean ethnicity
Asian ethnicity
Triglycerides
Alkaline phosphatase (ALP)
Lymphocyte count
Smoking status
Body mass index (BMI)
Random plasma glucose
Neutrophil count
-2.736365
0.132050
-0.248397
0.304147
-0.002375
0.139795
0.131153
0.060623
0.057593
-0.026467
-0.027369
-0.012826
C: 0.69 (0.63-0.77)
Brier score: 0.07
N/A C: 0.64 (0.58-0.69)
Brier score: 0.08
Lymphocyte coefficient:
-0.03608036.
Intercept: -2.706553
Slope: 1.3102021
C: 0.64 (0.58-0.69)
Brier score: 0.08
Figure 2C and 2D

C, C value (95% confidence interval) (see Methods).

$

The coefficients are relative to non-scaled values for forced-entry models, and to scaled and centered values for the LASSO model.