Table 4. Selected neutron models and corresponding X-ray reference models for re-refinement within REFMAC5 using external restraints.
Comparison of published R-factor statistics and those obtained by re-refinement using REFMAC5.
| PDB code | Published resolution range (low–high) (Å) | Published R values (work/free) (%) | REFMAC5 R values (work/free) (%) | |||
|---|---|---|---|---|---|---|
| Neutron | X-ray | Neutron | X-ray | Neutron | X-ray | Neutron refinement with external restraints |
| 1c57 | 1dq6 | 15.79–2.40 | 8.00–1.90 | 27.0/30.1 | 18.6/NA | 20.2/24.9 |
| 2efa | 1b2a | 80.00–2.50 | 55.00–1.70 | 21.6/29.1 | 18.8/23.0 | 21.9/25.3 |
| 2yz4 | 1dq6 | 33.64–2.20 | 8.00–1.90 | 27.9/31.2 | 18.6/NA | 21.7/27.3 |
| 2zpp | 1b2g | 20.00–2.50 | 10.00–1.80 | 22.1/26.0 | 20.0/22.6 | 20.8/25.4 |
| 3r98 | 3r98 | 53.54–2.40 | 43.89–2.10 | 20.7/25.1 | 16.6/20.3 | 17.8/25.2 |
| 3r99 | 3r99 | 53.54–2.40 | 43.89–2.10 | 20.7/25.0 | 16.6/20.3 | 17.9/25.3 |
| 3vxf | 3vxf | 44.87–2.75 | 29.22–1.60 | 18.3/23.4 | 16.1/18.4 | 16.8/23.5 |
| 3x2o | 3x2o | 18.83–1.50 | 28.23–1.00 | 22.8/25.1 | 13.5/15.3 | 21.2/23.9 |
| 3x2p | 3x2p | 19.68–1.52 | 37.75–0.99 | 21.8/26.0 | 13.4/14.2 | 22.0/25.7 |
| 4cvi | 4cvi | 39.84–2.41 | 14.80–2.10 | 17.6/24.3 | 13.4/17.6 | 14.0/22.8 |
| 4dvo | 4dvo | 20.00–2.00 | 29.90–1.55 | 19.0/21.4 | NA/NA | 18.4/22.2 |
| 4gpg | 4gpg | 37.61–1.98 | 50.00–1.89 | 19.5/25.9 | 14.6/20.3 | 20.9/25.7 |
| 4pvn | 4pvn | 52.28–2.30 | 43.13–1.95 | 20.9/26.2 | 15.6/18.5 | 18.7/26.8 |
| 5cg6 | 5cg6 | 22.12–2.40 | 44.31–1.70 | 26.0/28.7 | 19.6/21.1 | 24.0/27.8 |
| 5xpe | 5xpe | 17.02–2.09 | 46.50–1.64 | 22.5/27.8 | 15.5/18.5 | 20.5/29.7 |
| 5zn0 | 5zn0 | 33.76–1.90 | 36.01–1.10 | 18.8/24.7 | 18.6/21.2 | 16.7/25.5 |
| 6bq8 | 6bq8 | 40.00–2.20 | 10.00–2.00 | 23.2/28.8 | 19.9/24.5 | 19.7/29.2 |
| 6exy | 6exy | 28.20–1.70 | 31.93–1.10 | 15.0/18.7 | 12.3/13.7 | 16.0/19.8 |
| 6u0e | 6u0e | 14.51–1.89 | 29.01–2.10 | 21.7/25.4 | 18.4/23.5 | 21.4/26.7 |
| 7d6g | 7d6g | 26.33–2.10 | 40.00–1.65 | 17.7/21.9 | 15.7/18.6 | 14.6/22.1 |
| 7tx4 | 7tx4 | 12.75–2.35 | 61.05–1.90 | 17.7/25.9 | 16.6/22.4 | 15.2/26.0 |