REAGENT or RESOURCE | SOURCE | IDENTIFIER | |||
---|---|---|---|---|---|
Antibodies | |||||
Rabbit anti-MAP2 | Abcam | Ab32454; RRID: AB_776174 | |||
Rabbit anti-VGAT | Synaptic Systems | 131013; RRID: AB_2189938 | |||
Rabbit anti-Phospho-CREB | Cell Signaling | 9198; RRID: AB_2561044 | |||
Rabbit anti-CREB | Cell Signaling | 9197S; RRID: AB_331277 | |||
Rabbit anti-GAPDH | Cell Signaling | 2118S; RRID: AB_561053 | |||
Rabbit anti-H3K4me3 | Abcam | Ab32356; RRID: AB_732924 | |||
Rabbit anti-GABA | Sigma-Aldrich | A0310; RRID: AB_476667 | |||
Mouse anti-SET1A | Santa Cruz | SC-515590; RRID: N/A | |||
Mouse anti-γ-tubulin | Sigma-Aldrich | T5326; RRID: AB_532292 | |||
Mouse anti-Gephyrin | Synaptic Systems | 147011; RRID: AB_887717 | |||
Guinea pig anti-Synapsin 1/2 | Synaptic Systems | 106004; RRID: AB_1106784 | |||
Goat anti-rabbit IgG | Invitrogen | G-21234; RRID: AB_2536530 | |||
Goat anti-mouse IgG | Jackson Immuno Research Laboratories |
115-035-062; RRID: AB_2338504 | |||
Goat-anti rabbit Alexa 568 | Invitrogen | A11036; RRID: AB_10563566 | |||
Goat-anti-mouse Alexa 488 | Invitrogen | A11029; RRID: AB_2534088 | |||
Goat anti-guinea pig Alexa Fluor 568 | Invitrogen | A11075; RRID: AB_2534119 | |||
Goat anti-guinea pig Alexa Fluor 647 | Invitrogen | A21450; RRID: AB_141882 | |||
Bacterial and virus strains | |||||
AAV2-hSyn-mCherry | UNC Vector Core | AV5033E | |||
Chemicals, peptides, and recombinant proteins | |||||
Accutase | GIBCO | A11105-01 | |||
B27 Supplement | GIBCO | 0080085SA | |||
Cytosine β-D-arabinofuranoside (Ara-C) | Sigma-Aldrich | C1768-100MG | |||
BDNF, human recombinant | Promokine | C66212 | |||
DAKO fluorescent mounting medium | DAKO | S3023 | |||
DMEM/F12 | GIBCO | 11320–074 | |||
Doxycycline | Sigma-Aldrich | D9891-5G | |||
DPBS | GIBCO | 14190–094 | |||
E8 Basal Medium | GIBCO | A1517001 | |||
Fetal Bovine Serum (FBS) | Sigma-Aldrich | F2442-500ML | |||
Fluo-8-AM | Abcam | Ab142773 | |||
Forskolin | Sigma-Aldrich | F6886 | |||
G418 | Sigma-Aldrich | 4727878001 | |||
GlutaMAX | GIBCO | 35050061 | |||
Hoechst 33342 | Thermo-Fisher | H3570 N/A | |||
H89 | Tocris | 2910 | |||
KT5720 | Tocris | 1283 | |||
Matrigel | Corning | 356237 | |||
Non-essential amino acid solution NEAA | Sigma-Aldrich | M7145 | |||
N2 | GIBCO | 17502–048 | |||
Neurobasal Medium | GIBCO | 21103–049 | |||
NT-3, human recombinant | Promokine | C66425 | |||
ORY1001 | SelleckChem | RG6016 | |||
Penicillin/Streptomycin | Sigma-Aldrich | P4333 | |||
Poly-L-ornithine hydrobromide (PLO) | Sigma-Aldrich | P3655-10MG | |||
Primocin | Invivogen | ANT-PM-05 | |||
Puromycin | Invivogen | ANT-PR-1 | |||
Picrotoxin | Tocris | 1128 | |||
Recombinant Human Laminin LN521 | Biolamina | 2021–21 | |||
RevitaCell | Thermo-Fisher | A2644501 | |||
ReLeSR | Stem Cell Technologies | 058072 | |||
SQ22536 | Sigma-Aldrich | S153 | |||
Triton X-100 | Sigma-Aldrich | 9002-93-1 | |||
Critical commercial assays | |||||
24-well MEA system | Multichannel Systems, MCS GmbH, Reutlingen, Germany | N/A | |||
Zeiss Axio Imager Z1 Olympus | Zeiss | https://www.zeiss.com/ | |||
Multiclamp 700B amplifier | Molecular Devices, Wokingham, United Kingdom | https://www.moleculardevices.com/ | |||
cAMP ELISA kit | Abcam | Ab133051 | |||
BCA protein assay kit | Thermo-Fisher | 23225 | |||
iMark™ Microplate Absorbance Reader | Bio-Rad | N/A | |||
Deposited data | |||||
RNA-seq | This paper | GEO: GSE180648 | |||
Code | This paper | Zenodo: https://doi.org/10.5281/zenodo.6409947 | |||
Experimental models: Human iPSC lines | |||||
CTR-WTC | Corielll Institute | https://www.coriell.org/0/Sections/Search/Sample_Detail.aspx?Ref=GM25256&Product=CC | |||
WTC-CRISPR-clone 1 | Generated in this study | N/A | |||
WTC-CRISPR-clone 2 | Generated in this study | N/A | |||
CTR-WTC-Ngn2/rtTA | Generated in this study | N/A | |||
CTR-WTC-Ascl1/rtTA | Generated in this study | N/A | |||
WTC-CRISPR-clone 1- Ngn2/rtTA | Generated in this study | N/A | |||
WTC-CRISPR-clone 1- Ascl1/rtTA | Generated in this study | N/A | |||
WTC-CRISPR-clone 2- Ngn2/rtTA | Generated in this study | N/A | |||
WTC-CRISPR-clone 2- Ascl1/rtTA | Generated in this study | N/A | |||
CTR-409b2 | Yamanaka, Shinya / RIKEN BRC Generated | HPS0076; 409B2; RRID: CVCL_K092 | |||
409b2-CRISPR | Generated in this study | N/A | |||
CTR-409b2- Ngn2/rtTA | Generated in this study | N/A | |||
CTR-409b2- Ascl1/rtTA | Generated in this study | N/A | |||
409b2-CRISPR- Ngn2/rtTA | Generated in this study | N/A | |||
409b2-CRISPR- Ascl1/rtTA | Generated in this study | N/A | |||
Experimental models: Organisms/strains | |||||
Wistar WT Rat (Dissociated astrocytes) | Charles River | N/A | |||
Recombinant DNA | |||||
Lentivirus psPAX2 packaging vector Lentivirus | psPAX2 was a gift from Didier Trono | RRID: Addgene_12260; http://addgene.org/12260 | |||
Lentivirus VSVG envelope glycoprotein vector pMD2-G | pMD2.G was a gift from Didier Trono | RRID: Addgene_12259; http://addgene.org/12259 | |||
pSpCas9(BB)-2A-Puro (PX459) | Addgene | 62988 | |||
pLVX-EF1α-(Tet-On-Advanced)-IRES-G418(R) lentiviral vector | Mossink et al., 2021 | N/A | |||
pLVX-(TRE-thight)-(MOUSE) Ngn2-PGK-Puromycin(R) lentiviral vector | Mossink et al., 2021 | N/A | |||
pLV[TetOn]-Puro-TRE > mAscl1 lentiviral vector | Mossink et al., 2021 | N/A | |||
Software and algorithms | |||||
GraphPad Prism | GraphPad software | https://www.graphpad.com/scientific-software/prism/; RRID:SCR_002798 | |||
Fiji | National Institutes of Health |
https://imagej.nih.gov/ij/download.html RRID: SCR_003070 |
|||
ClampfitV 10.2 | Molecular Devices, LLC., CA, USA | RRID: SCR_011323 | |||
MATLAB 2014b | Mathworks | RRID: SCR_001622 | |||
Multiwell Analyzer | Multichannel Systems, MCS GmbH, Reutlingen, Germany | N/A | |||
Neurolucida 360 | MBF-Bioscience, Williston, ND, USA | RRID: SCR_016788 | |||
Image lab | Bio-Rad | https://www.bio-rad.com/en-nl/product/image-lab-software/ |