Table 2.

Differences in processing steps between the CIVET-human and CIVET-macaque configurations. The length scale is defined as a linear factor relative to the human brain size. The fwhm on surfaces is scaled to account for the gyral patterns in macaques.

Processing Step	Human Processing	Macaque Processing
Stereotaxic template	MNI-ICBM, ADNI, Colin27	NMT
Stereotaxic voxel sampling	0.50 or 1.0 mm	0.25 or 0.50 mm
Volumetric registration (fwhm, simplex, sampling)	length scale 1.0	length scale 0.4
Neck cropping (headheight)	175 mm	50 mm
Masking (search distance)	length scale 1.0	length scale 0.4
Non-uniformity corrections	spline distance 125 (3T)	spline distance 50 (4.7T)
Classification	priors on human template	priors on NMT
Segmented masks (brainstem, ventricles, cerebellum, etc.)	on human template	on NMT
Surface extraction (fwhm, gradient, dilation/erosion)	length scale 1.0	length scale 0.4
Surface resolution	40,962 or 163,842 vertices	40,962 or 163,842 vertices
Cortical thickness method	tlink, tlaplace, tfs	tlink, tlaplace, tfs
Cortical thickness blurring	30 mm fwhm	8mm fwhm
Surface registration (fwhm)	length scale 1.0	length scale 0.4
Surface parcellation	AAL, DKT, lobes	CHARM, D99, lobes