|
Experimental model; Tissue
|
|
|
| Wheat germ |
Bob’s RedMill |
B00AWNXMI2 |
|
Software and algorithms
|
|
|
| RELION 3.1 |
Scheres, S.H.W.201258
|
https://relion.readthedocs.io/en/release-3.1/index.html
|
| MotionCor2 v1.2.1 |
Zivanov et al., 201956
|
https://emcore.ucsf.edu/ucsf-software
|
| CTFFIND v4.1.13 |
Rohou and Grigorieff, 201557
|
https://grigoriefflab.umassmed.edu/ctffind4
|
| Cryosparc v3.32 |
Punjani et al., 201760
|
https://cryosparc.com
|
| Chimera v1.12 |
Petterson et al., 200472
|
https://www.cgl.ucsf.edu/chimera/
|
| ChimeraX v1.3 |
Petterson et al., 202173
|
https://www.cgl.ucsf.edu/chimerax/
|
| Coot v0.9.4.1 |
Emsley et al., 200466
|
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
|
| Phenix v1.20 |
Adams et al., 201062
|
https://phenix-online.org/
|
| CCPEM v1.6.0 |
|
https://www.ccpem.ac.uk/
|
|
|
|
|
Deposited Data
|
|
|
| Map for Cryo-EM structure of 80S ribosomal subunit from wheat germ |
This Study |
EMD-36334 |
| Map for Cryo-EM structure of 60S ribosomal subunit from wheat germ |
This Study |
EMD-36331 |
| Map for Cryo-EM structure of 40S ribosomal subunit from wheat germ |
This Study |
EMD-36332 |
| Map for Cryo-EM structure of the body of 40S ribosomal subunit from
wheat germ |
This Study |
EMD-36333 |
| Coordinates for cryo-EM structure of 40S ribosomal subunit from
wheat germ |
This Study |
PDB:8JIW |
| Coordinates for cryo-EM structure of 60S ribosomal subunit from wheat germ |
This Study |
PDB:8JIV |
| Cryo-EM structure of pre-60S ribosomal subunit |
Wu S et al., 201649
|
PDB: 3JCT |
| Structure of 80S ribosome from wheat germ at 5.5Å resolution |
Armache et al., 201464
|
PDB: 4V7E |
| High resolution structure of 60S ribosome from tomato |
Cottilli et al., 202216
|
PDB: 7QIZ |
| High resolution structure of human 80S ribosome |
Natchiar et al., 201714
|
PDB: 6QZP |
| High-resolution structure of ribosome from thermophilic fungi |
Kisionaite et al., 202245
|
PDB: 7OLC |
| High resolution structure of ribosome from Leishmania |
Shalev-Benami et al., 201767
|
PDB: 6AZ3 |
| High resolution structure of ribosome from Euglena |
Matzov et al., 202068
|
PDB: 6JZ3 |
| High resolution structure of ribosome from yeast |
Ben-Shem et al., 201170
|
PDB: 4V88 |
|
Reagents
|
|
|
| HEPES |
SRL |
Cat#63732
|
| Potassium Chloride |
SRL |
Cat#38630
|
| Magnesium acetate |
Sigma |
Cat#228648
|
| Calcium chloride |
Sigma |
Cat#C1016
|
| Dithiothreitol |
SRL |
Cat#17315
|
| Heparin |
SRL |
Cat#58389
|
| Benzamidine |
Sigma |
Cat#B-6506
|
| Soybean Trypsin Inhibitor |
Sigma |
Cat#T6522
|
| Phenylmethylsulphonyl fluoride |
Roche |
Cat#39212622
|
| Ethylenediaminetetraacetic acid |
Sigma |
Cat#60004
|
| β-Mercaptoethanol |
Sigma |
Cat#444203
|
| Tris-HCl |
Sigma |
Cat#10812846001
|
| Puromycin |
Sigma |
Cat#P8833
|