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. Author manuscript; available in PMC: 2025 May 2.
Published in final edited form as: Structure. 2024 Mar 7;32(5):562–574.e3. doi: 10.1016/j.str.2024.02.006
REAGENT OR RESOURCE SOURCE IDENTIFIER
Experimental model; Tissue
Wheat germ Bob’s RedMill B00AWNXMI2
Software and algorithms
RELION 3.1 Scheres, S.H.W.201258 https://relion.readthedocs.io/en/release-3.1/index.html
MotionCor2 v1.2.1 Zivanov et al., 201956 https://emcore.ucsf.edu/ucsf-software
CTFFIND v4.1.13 Rohou and Grigorieff, 201557 https://grigoriefflab.umassmed.edu/ctffind4
Cryosparc v3.32 Punjani et al., 201760 https://cryosparc.com
Chimera v1.12 Petterson et al., 200472 https://www.cgl.ucsf.edu/chimera/
ChimeraX v1.3 Petterson et al., 202173 https://www.cgl.ucsf.edu/chimerax/
Coot v0.9.4.1 Emsley et al., 200466 https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
Phenix v1.20 Adams et al., 201062 https://phenix-online.org/
CCPEM v1.6.0 https://www.ccpem.ac.uk/
Deposited Data
Map for Cryo-EM structure of 80S ribosomal subunit from wheat germ This Study EMD-36334
Map for Cryo-EM structure of 60S ribosomal subunit from wheat germ This Study EMD-36331
Map for Cryo-EM structure of 40S ribosomal subunit from wheat germ This Study EMD-36332
Map for Cryo-EM structure of the body of 40S ribosomal subunit from wheat germ This Study EMD-36333
Coordinates for cryo-EM structure of 40S ribosomal subunit from wheat germ This Study PDB:8JIW
Coordinates for cryo-EM structure of 60S ribosomal subunit from wheat germ This Study PDB:8JIV
Cryo-EM structure of pre-60S ribosomal subunit Wu S et al., 201649 PDB: 3JCT
Structure of 80S ribosome from wheat germ at 5.5Å resolution Armache et al., 201464 PDB: 4V7E
High resolution structure of 60S ribosome from tomato Cottilli et al., 202216 PDB: 7QIZ
High resolution structure of human 80S ribosome Natchiar et al., 201714 PDB: 6QZP
High-resolution structure of ribosome from thermophilic fungi Kisionaite et al., 202245 PDB: 7OLC
High resolution structure of ribosome from Leishmania Shalev-Benami et al., 201767 PDB: 6AZ3
High resolution structure of ribosome from Euglena Matzov et al., 202068 PDB: 6JZ3
High resolution structure of ribosome from yeast Ben-Shem et al., 201170 PDB: 4V88
Reagents
HEPES SRL Cat#63732
Potassium Chloride SRL Cat#38630
Magnesium acetate Sigma Cat#228648
Calcium chloride Sigma Cat#C1016
Dithiothreitol SRL Cat#17315
Heparin SRL Cat#58389
Benzamidine Sigma Cat#B-6506
Soybean Trypsin Inhibitor Sigma Cat#T6522
Phenylmethylsulphonyl fluoride Roche Cat#39212622
Ethylenediaminetetraacetic acid Sigma Cat#60004
β-Mercaptoethanol Sigma Cat#444203
Tris-HCl Sigma Cat#10812846001
Puromycin Sigma Cat#P8833