Table 1.
Characteristics of various extrachromosomal circular DNA structures
Structure | Size | Characteristics | References |
---|---|---|---|
EcDNA | 1–5 Mb | Singlets or doublets (formerly described as double minutes), harbour genes and regulatory elements. Rare in non-cancer cells | Turner et al. 2017 Deshpande et al. 2019 Verhaak et al. 2019 Wu et al. 2019 |
EccDNA | 0.1 Kb–1 Mb | Rarely harbour genes/regulatory elements unless size allows, seen in normal and cancer cells | Møller et al. 2018 Wang et al. 2021 |
Telomeric circles (or C-circles) | 100 bp to 30 Kb – integral multiples of 738 bp | Provide a specialised mechanism for telomere elongation via the alternative mechanism of telomere (ALT) mechanism, multiples of 738 bp |
Reddel 2003 |
microDNA | 100–400 bp | Seen in normal mouse and human cell lines, involved in small regulatory RNAs, such as miRNA generation | Shibata et al. 2012 Paulsen et al. 2018 Noer et al. 2022 |
Small polydispersed circular DNA (spcDNA) | 100 bp–10 Kb | Earliest description of eccDNA as described in HeLa cells, linked to genomic instability |
Smith and Vinograd 1972 Regev et al. 1998 |