Figure 2.

Example modules showcasing the range of functionality within MIA. The nine main module categories with examples for each. Many modules interact and utilise existing ImageJ plugins such as DeepImageJ,¹² Trainable Weka Segmentation,¹⁶ Bleach Correction,²⁶ Colour Deconvolution,²⁷ MorphoLibJ,⁹ TrackMate,⁴ Ridge Detection,⁵ StarDist,¹³ Analyze Skeletons,²⁸ BoneJ,²⁹ TrakEM2,⁶ bUnwarpJ,⁷ Stack Focuser³⁰ and Bio-Formats.¹⁵