Table 1. Mapping of PEIa.
chain element | group | atoms | charge | Martini 3 bead type |
---|---|---|---|---|
terminal unit (T) | primary amine | H2N−CH2 | 0+1 | TN6d TQ5d |
linear unit (L) | secondary amine | H2C−NH−CH2 | 0+1 | SN4 SQ4p |
dendritic unit (D) | tertiary amine | H2C−NCH2−CH2 | 0+1 | SN3a SQ3p |
Atom to bead mapping of the different chain elements (characterized by their amine group) and corresponding Martini 3 bead types both in their charged and uncharged state. Their respective Lennard-Jones parameters can be found in the Martini 3 force field file on GitHub https://github.com/marrink-lab/martini-force_fields/tree/main/martini_forcefields/regular/v3.0.0/gmx_files.