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. Author manuscript; available in PMC: 2024 Oct 29.
Published in final edited form as: Mol Pharm. 2024 Feb 19;21(5):2163–2175. doi: 10.1021/acs.molpharmaceut.3c00747

Table 1. Mapping of PEIa.

chain element group atoms charge Martini 3 bead type
terminal unit (T) primary amine H2N−CH2 0+1 TN6d TQ5d
linear unit (L) secondary amine H2C−NH−CH2 0+1 SN4 SQ4p
dendritic unit (D) tertiary amine H2C−NCH2−CH2 0+1 SN3a SQ3p
a

Atom to bead mapping of the different chain elements (characterized by their amine group) and corresponding Martini 3 bead types both in their charged and uncharged state. Their respective Lennard-Jones parameters can be found in the Martini 3 force field file on GitHub https://github.com/marrink-lab/martini-force_fields/tree/main/martini_forcefields/regular/v3.0.0/gmx_files.