REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Sheep polyclonal anti-Psf2 | Gambus lab | Gambus et al.56 |
Sheep polyclonal anti-Cdc45 | Gambus lab | Gambus et al.56 |
Sheep polyclonal anti-GINS | Gambus lab | Tarcan et al.57 |
Rabbit polyclonal anti-DONSON | Gambus lab | Kingsley et al.42 |
Sheep polyclonal anti-DONSON | Gambus lab | Kingsley et al.42 |
Sheep polyclonal anti-Mcm7 | Gambus lab | Priego Moreno et al.58 |
Sheep polyclonal anti-RecQ4 | Gambus lab | Moreno et al.59 |
Sheep polyclonal anti-TopBP1 | Gambus lab | Moreno et al.59 |
Sheep polyclonal anti-Treslin | Blow lab | Volpi et al.60 |
Sheep polyclonal anti-MTBP | Blow lab | Volpi et al.60 |
IgG from rabbit serum | Sigma-Aldrich | RRID: AB_1163659 |
Polyclonal rabbit anti-FLAG | Sigma-Aldrich | RRID: AB_439687 |
Monoclonal mouse anti-Mcm2 | BD Transduction labs | RRID: AB_2141952 |
Monoclonal mouse anti-PCNA | Santa Cruz Biotechnology | RRID: AB_628110 |
Monoclonal mouse anti-PCNA | Sigma Aldrich | RRID: AB_477413 |
Bacterial and virus strains | ||
Rosetta™(DE3) pLysS Competent Cells | Novagen (Merck) | 70956 |
BL21(DE3) Competent Cells | Novagen (Merck) | 69451 |
Chemicals, peptides, and recombinant proteins | ||
Aphidicolin | Bio-Techne Limited | Cat# 5736/1 |
Caffeine | Sigma-Aldrich | CAS: 58-08-2 |
ANTI-FLAG® M2 Magnetic Beads | Sigma-Aldrich | Cat# M8823 |
3X FLAG Peptide | Stratech Scientific Ltd | A6001 |
HisTrap HP | Cytiva | Cat# 17524801 |
HiTrap Heparin HP | Cytiva | Cat# 17040701 |
Cdc45-TEV-His10-FLAG5 | This study | Addgene agreement 83268 |
DONSON WT | Gambus lab | Kingsley et al.42 |
DONSON DEW (D374A; E377A; W381A) | This study | Addgene agreement 83268 |
DONSON S437A | This study | Addgene agreement 83268 |
DONSON WM (W234L; M463T) | This study | Addgene agreement 83268 |
DONSON 3A (V473A; R476A; Y481A) | This study | Addgene agreement 83268 |
DONSON D24 (D1-24) | This study | Addgene agreement 83268 |
DONSON DEWS (D374A; E377A; W381A; S437A) | This study | Addgene agreement 83268 |
DONSON DD1 (D1-155) | Gambus lab | Kingsley et al.42 |
GINS: (Psf1, Psf2, Psf3 and Sld5) | Gambus lab | Tarcan et al.57 |
Graphene oxide | Sigma-Aldrich | 763705-25ML |
Deposited data | ||
Xenla dCMGDo consensus cryo-EM map | This study | EMDB: EMD-18191 |
Xenla dCMGDo ATPase cryo-EM map | This study | EMDB: EMD-18192 |
Xenla sCMG consensus cryo-EM map | This study | EMDB: EMD-18195 |
Xenla dCMGDo – without MCM ATPase PDB coordinates | This study | PDB: 8Q6O |
Xenla dCMGDo – MCM ATPase PDB coordinates | This study | PDB: 8Q6P |
Xenopus laevis Cdc45-FLAG interactions on chromatin during DNA replication – Mass spectrometry data project | This study | PRIDE: PXD044422 |
Experimental models: Cell lines | ||
293FT | Thermo Fisher Scientific | R70007 |
Experimental models: Organisms/strains | ||
Xenopus laevis | Gambus lab | N/A |
Oligonucleotides | ||
DONSON DEW (D374A; E377A; W381A) forward: CTCTGCGCTAGAAGAGATGGGAGTTGAAGA TAAAATTAAAAAG; |
Sigma-Aldrich | N/A |
DONSON DEW (D374A; E377A; W381A) reverse: AAGCTCGCATCTTCCGCGCTTTCATC CGATGCCTC |
Sigma-Aldrich | N/A |
DONSON S437A forward: AAACTGTAAGGC GATTGTCGCTGC |
Sigma-Aldrich | N/A |
DONSON S437A reverse: TGAGGAAGTT CAGTAAAG | Sigma-Aldrich | N/A |
DONSON W234L forward: GTCGCTTCCTCT GGTACAGCTTTTTC |
Sigma-Aldrich | N/A |
DONSON W234L reverse: GGATGAATCCAG TGCACAAG | Sigma-Aldrich | N/A |
DONSON M463T forward: AGGAGCAACAA CGCACGCGCTTA |
Sigma-Aldrich | N/A |
DONSON M463T reverse: CGGAATGCGA CTGGAGAC |
Sigma-Aldrich | N/A |
DONSON 3A (V473A; R476A; Y481A) forward: GAACTCTGGTGCGAAGGATCAGTTTAGTCTGG; |
Sigma-Aldrich | N/A |
DONSON 3A (V473A; R476A; Y481A) reverse: ACCGCAGTCTTCGCATTCACACTCCTTG CCTTAAG |
Sigma-Aldrich | N/A |
DONSON D24 (Δ1-24) forward: AGGAGCAGG AGCGAGGCT |
Sigma-Aldrich | N/A |
DONSON D24 (Δ1-24) reverse: CAGATCCTCT TCTGAGATGAGTTTTTGTTCG |
Sigma-Aldrich | N/A |
DONSON DD1 (Δ1-155) forward: TCCGTGAC TTTTCCTGCT |
Sigma-Aldrich | N/A |
DONSON DD1 (Δ1-155) reverse: CATTTATTT CCAGGTGTACC |
Sigma-Aldrich | N/A |
Recombinant DNA | ||
pET28a-DONSON | Gambus lab | Addgene: 208797 |
pET28a-DONSON ΔD1 | Gambus lab | Addgene: 208804 |
pET28a-DONSON-WM (W234L, M463T) | This study | Addgene: 208798 |
pET28a-DONSON-DEWS (D374A, E377A, W381A, S437A) |
This study | Addgene: 208799 |
pET28a-DONSON-3A (V473A, R476A, Y481A) | This study | Addgene: 208800 |
pET28a-DONSON Δ24 (1-24 removed) | This study | Addgene: 208801 |
pET28a-DONSON-S437A | This study | Addgene: 208803 |
pET28a-DONSON-DEW (D374A, E377A, W381A) | This study | Addgene: 208802 |
Software and algorithms | ||
crYOLO 1.4.0 | Wagner et al.61 | https://cryolo.readthedocs.io/en/stable/ |
Relion 3.0.4 and 4.0.0 | Kimanius et al.62; Zivanov et al63 |
https://www.mrc-lmb.cam.ac.Uk/relion/index.php?title=Main_Page |
cryoSPARC v4.2.1 | Punjani et al.64 | https://cryosparc.com/ |
Gctf | Zhang et al.65 | https://sbgrid.org/software/titles/gctf |
CtfFind-4.1 | Rohou et al.66 | https://grigoriefflab.umassmed.edu/ctffind4 |
Topaz-0.2.5 | Bepler et al.67 | https://cb.csail.mit.edu/cb/topaz/ |
Coot V0.9.8.1 | Emsley et al.68 | https://www.mrc-lmb.cam.ac.uk/personal/pemsley/coot/ |
PHENIX V1.20.1 | Liebschner et al.69 | http://www.phenix-online.org/ |
UCSF Chimera V1.16 |
Pettersen et al.70 | https://www.cgl.ucsf.edu/chimera/ |
UCSF ChimeraX | Goddard et al.71 | https://www.rbvi.ucsf.edu/chimerax/ |
Mascot v 2.8.0.1 | Matrix Science, London, UK | https://www.matrixscience.com/ |
Scaffold v 5.1.0 | Proteome Software Inc., Portland | https://proteomesoftware.com/ |
AcquireMP v 2.5 | Refeyn Ltd., Oxford, UK | https://www.refeyn.com/ |
DiscoverMP v 2.5 | Refeyn Ltd., Oxford, UK | https://www.refeyn.com/ |
GraphPad Prism v 10.0.2 | GraphPad Software LLC | https://www.graphpad.com/ |