Skip to main content
. Author manuscript; available in PMC: 2025 Jul 4.
Published in final edited form as: J Infect. 2024 Sep 7;89(5):106265. doi: 10.1016/j.jinf.2024.106265

Fig. 1. Isolate genomes used in this study.

Fig. 1

(A) Overview of the number of isolates from each source, including chicken (yellow; n = 9395), cattle (green; n = 5023), swine (pink; n = 1175), clinical cases (grey; n = 8856), environmental sources (blue; n = 248), turkey (orange; n = 497) and a global collection from birds (purple; n = 365). Samples were collected from all over the US, with states that contributed higher numbers of samples coloured more deeply on the maps. (B) Phylogeny of 18,306 C. jejuni genomes constructed using mashtree, coloured by source. The two large host generalist clonal complexes (ST-21 CC and ST-45 CC) are labelled along with the chicken-associated clonal complex.74 (C) Mash phylogeny of 7253 C. coli coloured by source. The large host generalist clonal complex, ST-828 CC and three ancestral clades (Clades 1, 2 and 3) are labelled along with the highly introgressed ST-1150 clonal complex.41,58,75