Table 2.
The muscle-related GO terms of DELs co-expressed genes during muscle development stages in Huainan and Large white pigs
| GO terms | H58/H38 | LW58/LW38 | H78/H58 | LW78/LW58 | H58/LW58 | H78/LW78 |
|---|---|---|---|---|---|---|
| muscle cell differentiation | ↑ 9 (0.260) | ↑ 9 (0.241) | ↑10 (0.062) | ↑ 6 (0.438) | ↓ 6 (0.868) | |
| contractile fiber | ↑ 8 (0.065) | ↑ 7 (0.180) | ↑ 8 (0.084) | ↑ 8 (0.011) | ↑ 5 (0.361) | |
| myofibril | ↑ 7 (0.089) | ↑ 6 (0.268) | ↑ 7 (0.106) | ↑ 7 (0.027) | ↑ 4 (0.415) | |
| regulation of glucose metabolic process | ↑ 5 (0.124) | ↑ 5 (0.227) | ↑ 5 (0.163) | ↑ 5 (0.046) | ↑ 3 (0.480) | |
| muscle structure development | ↑12 (0.157) | ↑11 (0.278) | ↑12 (0.174) | ↑13 (0.029) | ↑ 8 (0.385) | |
| muscle system process | ↑ 9 (0.160) | ↑ 8 (0.278) | ↑ 6 (0.247) | ↑ 9 (0.061) | ↑ 6 (0.385) | |
| muscle tissue development | ↑11 (0.148) | ↑10 (0.278) | ↑10 (0.212) | ↑13 (0.011) | ↓ 7 (0.757) | |
| skeletal muscle tissue development | ↑ 8 (0.160) | ↑ 8 (0.240) | ↑10 (0.011) | ↑ 5 (0.415) | ↓ 5 (0.778) | |
| skeletal muscle organ development | ↑ 8 (0.161) | ↑ 8 (0.260) | ↑10 (0.011) | ↑ 5 (0.438) | ↓ 5 (0.847) | |
| muscle organ development | ↑10 (0.180) | ↑ 9 (0.312) | ↑12 (0.013) | ↑ 6 (0.480) | ↓ 7 (0.608) | |
| myofibril assembly | ↑ 4 (0.124) | ↑ 4 (0.163) | ↑ 4 (0.046) | ↓ 3 (0.544) | ||
| striated muscle tissue development | ↑10 (0.180) | ↑ 9 (0.334) | ↑12 (0.015) | ↓ 7 (0.608) | ||
| response to oxygen-containing compound | ↑19 (0.124) | ↑19 (0.179) | ||||
| cell proliferation | ↑20 (0.195) | ↓16 (0.544) |
Note: ↑: up-regulated; ↓: down-regulated; numbers next to the arrow showed the number of differently expressed genes in this GO term; numbers in the brackets showed the corrected P-values