Table 2.
Sequence, gene entry and name, transcript number and origin of the AltProts identified to be in direct interaction with the TPM RefProt family members after 48 h of Forskolin treatment in NCH82 cells
| AltProt | Sequence | Gene | Gene name | Transcript number | Origin |
|---|---|---|---|---|---|
| TPM4 | |||||
| IP_061498.1 | MGFIYFHELQHLHIQGLDHFRINILTREKAAQKGLRKIAQSQSRPSV | 54952 | TRNAU1AP | NM_017846.4 | 3′UTR |
| IP_118417.1 | MARGNQDGPVYRDFHGKWIQFNGRCGSGDLGVSNFSDNFYIIAGARKIVQKPIWMR | 2044 | EPHA5 | NM_001281767.1 | CDS-3′UTR |
| IP_094793.1 | MLKPVWTMGLRSLHSPQADPAWHHPDDSAMSPRLEASTCSNLLSLPLWLRMSLLHSLSRACEYFSFSIEIIIFRHELLAGVGSEQLLYSFFINHKINNLIPKL | 4133 | MAP2 | NM_001039538.1 | CDS-3′UTR |
| TPM3 | |||||
| IP_218514.1 | MHLDGRLLMKWKSSSVSRLIETSEKPKRNWRQKWKQLGMNTN | 55269 | PSPC1 | NM_001042414.2 | CDS+2 |
| IP_159909.1 | MLVKNRKLCLAWPRREDPSGQEQPSNMAQPHLCSPTSDPQLLEPKGSRLQ | 101930567 | Removed | XR_428143.1 | – |
| IP_274074.1 | MGIHVVFIKTLMYTRKFIMRSSINVRNTEGPLKELEKLLHFKEFMMVRNTLNAHSVGNPLECMHNLLDIRKSILMRKLTNVWNVARTSDFIHSLPNIREFILVRNPTNVCTVRRFLELVHSSLNIREFTLVRNLMHVRNVGRLLEYVENLLVIREFILENTVDGFNR | 57711 | Removed | XM_006723305.1 | – |
| IP_163557.1 | MRNVINPEKRAEGRERRRGHWGRPERGEREARRVWQADPEIPGARRTRRPEGRPRPM | 59339 | PLEKHA2 | NM_021623.1 | 5′UTR (NCBI) |
| IP_303632.1 | MIKLKYERNLHKEFTWSIAENTRKLHITPKQLI | 84295 | PHF6 | NM_032335.3 | CDS+2 |
| PLEC | |||||
| IP_070624.1 | MIKVNQMTPRLSPRTAIPSVNKSVSPNASPAV | 149018 | LELP1 | NM_001010857.2 | CDS+2 |
| IP_291098.1 | MERRNQPRRIKRWEQARKPGLSLENNEEGQKENTILLHPLMT | 100505746 | ITGB2-AS1 | NR_038311.1 | ncRNA |