Table 2.
Single-turnover deamination kinetics of ADAR2-R2D E488Q and dimerization mutants on D-site of the 5-HT2c-R substratea.
Enzymeb | k obs (min−1)c | k rel d |
---|---|---|
ADAR2-R2D E488Q | 2.13 ± 0.30 | 1 |
ADAR2-R2D E488Q, T501A | >3 | - |
ADAR2-R2D E488Q, W502A | 0.12 ± 0.03 | 0.056 |
ADAR2-R2D E488Q, D503A | 2.32 × 10−3 ± 0.76 × 10−3 | 0.001 |
a5-HT2c pre-mRNA substrate sequence as shown in Supplementary Table S1.
bADAR2-R2D reactions were carried out with 100 nM enzyme, 10 nM RNA substrate in 17 mM Tris pH 7.4, 60 mM KCl, 15.6 mM NaCl, 1.6 mM EDTA, 0.003% Nonidet P-40, 0.5 mM DTT, 1.0 μg/ml yeast tRNA (Torula), 160 units/ml RNasin.
c k obs was calculated by fitting the time course to the equation: [P]t = α[1 –e−kobst] where [P]t is percent edited, α is the end point fitted to 95%, and kobs is the observed rate constant.
d k rel = kobs for mutant/kobs for ADAR2-R2D E488Q.