Table 3.

Sequences of 25 nt 2CNqA-ssRNAs and complementary tC_nitro-ssRNAs used in the RNA FRET study

Sequence namea	5′-3′ Sequence (X = 2CNqA, Y = tCnitro)
RNA-D0	CGA CAA AAU CAA AAU GCG UGA UUG G
RNA-D6	CGA CAX AAU CAA AAU GCG UGA UUG G
RNA-D7	CGA CAA XAU CAA AAU GCG UGA UUG G
RNA-D12	CGA CAA AAU CAX AAU GCG UGA UUG G
RNA-D13	CGA CAA AAU CAA XAU GCG UGA UUG G
RNA-A0	CCA AUC ACG CAU UUU GAU UUU GUC G
RNA-A6	CCA AUY ACG CAU UUU GAU UUU GUC G
RNA-A8	CCA AUC AYG CAU UUU GAU UUU GUC G
RNA-A10	CCA AUC ACG YAU UUU GAU UUU GUC G

^aSequence names indicate position of the donor (D) or the acceptor (A) in the oligonucleotide counted from its 5′ end, whereas RNA-D0 and RNA-A0 denote unmodified reference sequences.