Table 1.
Binding of TrmA wild-type and variants to tRNAPhe in the presence and absence of SAM. The dissociation constants (KD) and standard deviations were determined in triplicate by nitrocellulose filter binding (Figure 2, Supplementary Figure S1).
TrmA variant | K D, μM | |
---|---|---|
[3H]-tRNA | [3H]-tRNA + SAM | |
Wild-type (wt) | 0.02 ± 0.01a | 0.66 ± 0.11 |
C324A | 1.08 ± 0.16 | 0.03 ± 0.02a |
E358Q | 0.07 ± 0.04a | 0.011 ± 0.007 |
Q190A | 0.28 ± 0.10 | 1.5 ± 0.2 |
G220D | 0.22 ± 0.05 | 0.06 ± 0.03 |
R51A | 0.14 ± 0.07 | 1.15 ± 0.34 |
R51A C324A | 2.8 ± 0.7 | 0.16 ± 0.06 |
F106A | 1.0 ± 0.4 | 2 ± 1 |
F106A C324A | 18 ± 7 | 6 ± 2 |
H125A | 4 ± 3 | 6 ± 2 |
H125A C324A | 47 ± 27 | 3 ± 1 |
F106E | 1.6 ± 0.9 | 3.2 ± 1.0 |
H125E | 1.4 ± 0.4 | 2.1 ± 0.8 |
aNote that KDs in the very low nanomolar range have not been determined with high accuracy as very few data points are found in this region of the binding curve.