Table 2.
All mutations found in the coding regions of the 14 isolates compared to the reference strain. (Legends: S1: EPI_ISL_437912; S2: EPI_ISL_445213; S3: EPI_ISL_445214; S4: EPI_ISL_445215; S5: EPI_ISL_445216; S6: EPI_ISL_445217; S7: EPI_ISL_445244; S8: EPI_ISL_450339; S9: EPI_ISL_450340; S10: EPI_ISL_4503441; S11: EPI_ISL_450342; S12: EPI_ISL_450343; S13: EPI_ISL_450344; S14: EPI_ISL_450345).
| Strain | Mutation | Protein | Amino Acid Changes | Mutation Types |
|---|---|---|---|---|
| S11, 14 | 283:C > T | ORF1a Polyprotein | No change | Synonymous |
| S9, 10 | 602:C > T | ORF1a Polyprotein | No Change | Synonymous |
| S1,2,3, 4,6 | 1164:A > T | ORF1a Polyprotein | I300F | Missense |
| S1,2,3, 4, 5, 6, 7, 12, 13 | 3038:C > T | ORF1a Polyprotein | No Change | Synonymous |
| S5 | 3689:C > T | ORF1a Polyprotein | No Change | Synonymous |
| S2,3, 4, 6 | 4445:G > T | ORF1a Polyprotein | No Change | Synonymous |
| S8 | 6730:A > G | ORF1a Polyprotein | N2155S | Missense |
| S2, 3, 4, 6 | 8372:G > T | ORF1a Polyprotein | Q2702H | Missense |
| S8, 9, 10, 11, 14 | 8783:C > T | ORF1a Polyprotein | No change | Synonymous |
| S8, 9, 10, 11 | 10330:A > G | ORF1a Polyprotein | D3355G | Missense |
| S14 | 10871:G > T | ORF1a Polyprotein | K3353R | Missense |
| S2 | 10980:G > A | ORF1a Polyprotein | V3572M | Missense |
| S11 | 12120:C > T | ORF1a Polyprotein | P3952S | Missense |
| S8 | 12485:C > T | ORF1a Polyprotein | No Change | Synonymous |
| S1, 2, 3, 4, 5, 6, 7, 12, 13 | 14409:C > T | ORF1ab Polyprotein | P214L | Missense |
| S5, 8, 9, 10, 11, 14 | 15325:C > T | ORF1ab Polyprotein | No Change | Synonymous |
| S8 | 15739:C > T | ORF1ab Polyprotein | No change | Synonymous |
| S4 | 15896:C > T | ORF1ab Polyprotein | No Change | Synonymous |
| S1 | 17020:G > T | ORF1ab Polyprotein | E1084D | Missense |
| S12, 13 | 18878:C > T | ORF1ab Polyprotein | No Change | Synonymous |
| S11 | 19405:G > A | ORF1ab Polyprotein | V1883T | Missense |
| S12, 13 | 22445:C > T | Surface Glycoprotein | No change | Synonymous |
| S14 | 23321:C > T | Surface Glycoprotein | No change | Synonymous |
| S8, 9, 10, 11, 14 | 22469:G > T | Surface Glycoprotein | No change | Synonymous |
| S1,2, 3, 4, 5, 6, 7, 12, 13 | 23404:A > G | Surface Glycoprotein | D623G | Missense |
| S3 | 24488:T > C | Surface Glycoprotein | F1118L | Missense |
| S12, 13 | 25495:G > T | ORF3a protein | No change | Synonymous |
| S14 | 25506:A > T | ORF3a protein | Q38L | Missense |
| S12 | 25512:C > T | ORF3a protein | S40L | Missense |
| S12, 13 | 25564:G > T | ORF3a protein | Q57H | Missense |
| S2, 4, 6 | 25907:G > T | ORF3a protein | G172C | Missense |
| S12, 13 | 26736:C > T | Membrane Glycoprotein | No Change | Synonymous |
| S12 | 27282:G > T | ORF6 protein | W27L | Missense |
| S2 | 27432−27651:DEL | ORF7a protein | Whole protein deletion | Deletion |
| S6 | 27486−27613:DEL | ORF7a protein | Whole protein deletion | Deletion |
| S12, 13 | 27911−28254:DEL | ORF8 | Whole protein deletion | Deletion |
| S14 | 28098:C > T | ORF8 | A65V | Missense |
| S8, 9, 10, 11, 14 | 28145:T > C | ORF8 | L84S | Missense |
| S8, 9, 10, 11, 14 | 28879:G > A | Neucleocapsid phospoprotein | S202N | Missense |
| S1,2,3, 4, 6 | 28882:G > A | Neucleocapsid phospoprotein | R203K | Missense |
| S1,2,3, 4, 6 | 28883:G > A | Neucleocapsid phospoprotein | R203K | Missense |
| S1,2,3, 4, 6 | 28884:G > C | Neucleocapsid phospoprotein | G204R | Missense |
| S9, 10 | 29293:G > T | Neucleocapsid phospoprotein | K373N | Missense |
| S2,3, 4, 6 | 29404:A > G | Neucleocapsid phospoprotein | D377G | Missense |
| S8, 9, 10, 11, 14 | 29643:G > A | ORF10 | No Change | Synonymous |