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. 2020 Oct 9;48(19):e114. doi: 10.1093/nar/gkaa829

Figure 5.

Figure 5.

Comparison of variant calling accuracy for HG002 CCS reads using Minimap2 and Minimap2 + DuploMap. SNVs were called using Longshot for different mapping quality thresholds. Precision, recall and F1 values were calculated by comparison to the GIAB v4.1 benchmark calls in the Long-SegDups regions that overlapped with the GIAB high-confidence regions.