TABLE 5.
KEGG enrichment analyses
| KEGG no. | Description | Transcriptomics |
Proteomics |
||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| t3 |
t4 |
t5 |
t3 |
t4 |
t5 |
||||||||
| P value (adjusted) | Gene count | P value (adjusted) | Gene count | P value (adjusted) | Gene count | P value (adjusted) | Protein count | P value (adjusted) | Protein count | P value (adjusted) | Protein count | ||
| ko01230 | Biosynthesis of amino acids | 3.31E−34 | 48 | 2.73E−31 | 33 | 8.13E−23 | 31 | 3.74E−05 | 7 | 5.80E−03 | 5 | 5.69E−06 | 10 |
| ko03010 | Ribosome | 2.11E−13 | 23 | 2.54E−05 | 9 | 8.77E−03 | 7 | 4.91E−06 | 7 | 4.42E−16 | 16 | ||
| ko00230 | Purine metabolism | 4.74E−10 | 23 | 2.66E−02 | 6 | 5.00E−05 | 12 | 1.45E−07 | 9 | 4.49E−04 | 6 | ||
| ko00220 | Arginine biosynthesis | 4.06E−07 | 11 | 3.13E−07 | 8 | 5.51E−06 | 8 | ||||||
| ko00250 | Alanine, aspartate, and glutamate metabolism | 2.08E−06 | 11 | 8.77E−03 | 5 | 4.83E−02 | 2 | ||||||
| ko00270 | Cysteine and methionine metabolism | 5.12E−06 | 13 | 1.00E−02 | 5 | 4.34E−02 | 5 | 2.39E−02 | 4 | ||||
| ko01210 | 2-Oxocarboxylic acid metabolism | 7.86E−06 | 11 | 1.27E−09 | 11 | 5.51E−06 | 9 | 3.74E−05 | 5 | 1.20E−02 | 3 | 8.75E−03 | 4 |
| ko00240 | Pyrimidine metabolism | 4.65E−05 | 11 | 2.37E−05 | 9 | ||||||||
| ko01200 | Carbon metabolism | 6.22E−05 | 21 | 2.92E−03 | 10 | 1.24E−02 | 5 | ||||||
| ko03440 | Homologous recombination | 1.14E−04 | 9 | 2.92E−04 | 4 | 4.10E−02 | 3 | ||||||
| ko03430 | Mismatch repair | 2.10E−04 | 7 | 6.10E−05 | 4 | 1.30E−03 | 4 | ||||||
| ko00521 | Streptomycin biosynthesis | 2.40E−04 | 5 | ||||||||||
| ko00340 | Histidine metabolism | 2.40E−04 | 7 | 1.64E−09 | 9 | 8.79E−08 | 9 | ||||||
| ko02024 | Quorum sensing | 2.82E−04 | 17 | 9.30E−03 | 8 | ||||||||
| ko00061 | Fatty acid biosynthesis | 7.07E−04 | 6 | 4.34E−02 | 3 | ||||||||
| ko03060 | Protein export | 7.07E−04 | 6 | 1.68E−02 | 3 | ||||||||
| ko00260 | Glycine, serine, and threonine metabolism | 8.68E−04 | 9 | ||||||||||
| ko00300 | Lysine biosynthesis | 1.43E−03 | 6 | 1.14E−04 | 6 | ||||||||
| ko03420 | Nucleotide excision repair | 1.72E−03 | 6 | ||||||||||
| ko00550 | Peptidoglycan biosynthesis | 2.07E−03 | 6 | 1.62E−06 | 8 | ||||||||
| ko00290 | Valine, leucine, and isoleucine biosynthesis | 2.44E−03 | 4 | 1.31E−04 | 4 | 5.08E−04 | 4 | 1.44E−04 | 3 | 1.20E−02 | 2 | ||
| ko00670 | One-carbon pool by folate | 3.16E−03 | 5 | 4.06E−02 | 3 | 1.74E−02 | 2 | ||||||
| ko00710 | Carbon fixation in photosynthetic organisms | 3.16E−03 | 5 | ||||||||||
| ko03030 | DNA replication | 5.17E−03 | 6 | 3.36E−03 | 3 | 2.81E−02 | 3 | ||||||
| ko03070 | Bacterial secretion system | 1.47E−02 | 6 | ||||||||||
| ko00620 | Pyruvate metabolism | 1.76E−02 | 7 | 3.49E−02 | 5 | ||||||||
| ko00900 | Terpenoid backbone biosynthesis | 2.32E−02 | 5 | 2.63E−02 | 4 | ||||||||
| ko01212 | Fatty acid metabolism | 2.46E−02 | 6 | ||||||||||
| ko00770 | Pantothenate and CoA biosynthesis | 2.53E−02 | 4 | 1.72E−03 | 4 | 7.44E−03 | 4 | 1.76E−02 | 2 | 3.23E−02 | 2 | ||
| ko01502 | Vancomycin resistance | 3.00E−02 | 3 | ||||||||||
| ko00970 | Aminoacyl-tRNA biosynthesis | 3.28E−02 | 5 | 1.42E−06 | 9 | ||||||||
| ko00020 | Citrate cycle (TCA cycle) | 7.05E−05 | 6 | 3.65E−02 | 2 | 2.90E−03 | 4 | ||||||
| ko00660 | C5-branched dibasic acid metabolism | 6.59E−04 | 4 | ||||||||||
| ko00400 | Phenylalanine, tyrosine and tryptophan biosynthesis | 1.80E−03 | 5 | 4.34E−02 | 4 | ||||||||
| ko00010 | Glycolysis/gluconeogenesis | 7.74E−03 | 5 | ||||||||||
| ko00791 | Atrazine degradation | 2.89E−02 | 2 | ||||||||||
| ko01502 | Vancomycin resistance | 1.10E−02 | 3 | ||||||||||
| ko00983 | Drug metabolism, other enzymes | 3.28E−02 | 3 | ||||||||||
| ko00720 | Carbon fixation pathways in prokaryotes | 1.24E−02 | 3 | ||||||||||