TABLE 2.
FIMO scan for occupancy of KSHV LBS1-like sites on the human genome by kLANA.
Cell line | Binding to TSS (%) | LBS1-like sites occupied by kLANA (%) | kLANA peaks containing LBS1-like sites (%) | kLANA peaks detectable after I-BET151 treatment (%) |
BCBL-1 | 65.6 | 0.18 | 50 | 28.57 |
BJAB-rKSHV.219 | 50 | 0.15 | 59.7 | 17.7 |
BJAB-kLANA | 45 | 2.1 | 7.3 | 43.8 |
The second column shows the percent of kLANA peaks present within ±3 kbp of the TSS. Third column shows percent of KSHV LBS1-like sites occupied by kLANA on the human genome. The fourth column shows percent of total kLANA peaks on the human genome containing KSHV LBS1-like sites. Finally, the fifth column shows percent of kLANA peaks detectable after I-BET treatment.