TABLE 2.
Variability in the two universal chloroplast DNA barcodes and the 10 novel markers in Salvia species.
Markers | Length (bp) | Variable sites |
PI sitesa |
Nucleotide diversity | Number of haplotypes | ||
Number | % | Number | % | ||||
trnK-rps16 | 557 | 60 | 10.77 | 31 | 5.57 | 0.041 | 9 |
atpH-atpI | 840 | 203 | 24.17 | 36 | 4.29 | 0.067 | 8 |
psaA-ycf3 | 625 | 117 | 18.72 | 18 | 2.88 | 0.052 | 8 |
ndhC-trnV | 862 | 334 | 38.75 | 31 | 3.60 | 0.096 | 9 |
ndhF | 2,217 | 129 | 5.82 | 68 | 3.07 | 0.022 | 8 |
rpl32-trnL | 619 | 97 | 15.67 | 47 | 7.59 | 0.058 | 9 |
ndhG-ndhI | 339 | 53 | 15.63 | 31 | 9.14 | 0.061 | 9 |
rps15-ycf1 | 369 | 51 | 13.82 | 29 | 7.86 | 0.053 | 8 |
ycf1a | 974 | 58 | 5.95 | 27 | 2.77 | 0.020 | 9 |
ycf1b | 1,024 | 115 | 11.23 | 47 | 4.59 | 0.039 | 8 |
rbcL | 1,446 | 37 | 2.56 | 19 | 1.31 | 0.009 | 7 |
matK | 1,535 | 90 | 5.86 | 49 | 3.19 | 0.023 | 9 |
aParsimony informative sites.