Skip to main content
. 2020 Sep 8;10(11):4049–4062. doi: 10.1534/g3.120.401718

Table 2. SVM-generated classifiers (Asthma Gene Expression signatures) for sample types (blood, Macrophage, induced sputum) that are widely used to study the pathology of asthma. Percent predictive accuracy for each classifier has also been indicated.

Tissue Type Asthma Gene Signature (for >80% predictive accuracy) % correct prediction
Blood (GSE69683) MYD88, MYL12A, BOLA2, HBXIP, ACSL1, VPS24, GPM6B, F5, PDE7A, AB11FIP3, ZNF785, TCF4, RAB11A, GPR109B, GNAQ, DIS3L2,, SLC7A5P1/P2, TSR2, AMICA1, CR1, QRICH1, SERBP1, ZNF37A, DERL2, ZBTB20, CDC42SE1, NSMAF, KIAA0562, NT5C2, DAPP1, ATP6V0E1, LOC203274, TMEM59, NAPEPLD, ANXA3, WIPI2, ATAD5, LARS, PTBP1, SPG7, DNAJC16, IL6ST, CLN8, SAT1, EVI2B, MRPS5, AQP9, RPP14, ZNF747, GAPT 83
Macrophage Cells (GSE2125) KBTBD2, UPF3A, MLLT10, PSPC1, ST3GAL1, ARFRP1, TRIM14, EIF4G1, BM25, CDK11A/B, 83
Induced Sputum (GSE76262) IL18R1, TLR7, GPR85, LIMA1, SPINT1, EIF1AY, PDCD6, MGAT4A, CSTA, LOC100129845 96