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. 2020 Nov 4;11:5578. doi: 10.1038/s41467-020-19382-9

Table 2.

Characteristics of participants with microbiome data at crossover according to assigned study arm (intention-to-treat).

COC (n = 37) Net-En (n = 33) CCVR (n = 34) P value
CST distributiona 0.029
CST-I 7 (18.9%) 13 (39.4%) 7 (20.6%)
CST-III 17 (45.9%) 4 (12.1%) 11 (32.4%)
CST-IV 13 (35.1%) 16 (48.5%) 16 (47.1%)
Vaginal pH, mean (sd) 4.7 (4.2–5.1) 4.8 (4.2–5.5) 5.0 (4.5–5.5) 0.101
>4.5 21 (56.8%) 22 (66.7%) 25 (73.5%) 0.327
Shannon Index (SI), median (IQR) 0.90 (0.35–1.54) 1.64 (0.75–2.22) 1.66 (0.79–1.95) 0.004
Median change in SI from baseline (IQR) −0.27 (−0.90–0.25) −0.08 (−1.04–0.46) 0.14 (−0.33–0.70) 0.130
HSV-2 serology 13 (35.1%) 10 (30.3%) 13 (38.2%) 0.790
Yeast cells present 4 (10.8%) 6 (18.2%) 6 (17.6%) 0.629
BV prevalence 0.522
BV positive 13 (35.1%) 16 (48.5%) 14 (41.2%)
BV intermediate 3 (8.11%) 0 (0.0%) 1 (2.94%)
BV negative 21 (56.8%) 17 (51.5%) 19 (55.9%)
STI incidence
Any STI(s) 7 (18.9%) 9 (27.3%) 13 (38.2%) 0.192
 Ct 4 (10.8%) 4 (11.8%) 8 (23.5%) 0.273
 Ng 2 (5.41%) 1 (2.94%) 7 (20.6%) 0.057
 Tv 1 (2.70%) 1 (2.94%) 1 (2.94%) 1.000
 Mg 1 (2.70%) 3 (9.38%) 0 (0.0%) 0.161
Inflammation categorya 0.149
High 16 (44.4%) 16 (48.5%) 22 (66.7%)
Low 20 (55.6%) 17 (51.5%) 11 (33.3%)
Antibiotic use since the last visit 16 (45.7%) 14 (42.4%) 10 (29.4%) 0.416
Days since the last menstrual period, median (IQR)b 21 (12–78) 51 (15–157) 27 (13–70) 0.354
Sexual risk behavior since the last visitc
Any sexual partners, n (%) 32 (91.4%) 25 (89.3%) 29 (90.6%) 1.000
Multiple sexual partners, n 1 (2.86%) 1 (3.57%) 0 (0.00%) 0.749
New partner, n 2 (5.71%) 1 (3.7%) 0 (0.0%) 0.503
Sex acts per week, median (IQR) 1 (1–2) 1 (1–2) 1 (1–2) 0.260
Condom use 0.260
 Never 6 (17.1%) 7 (25.0%) 8 (25.0%)
 Less than half the time 6 (17.1%) 1 (3.57%) 3 (9.38%)
 Half the time 16 (45.7%) 12 (42.9%) 7 (21.9%)
 More than half the time 3 (8.6%) 2 (7.14%) 4 (12.5%)
 Always 4 (11.4%) 6 (21.4%) 10 (31.3%)
Condom use during the last PV intercourse 0.407
  Yes 21 (60.0%) 13 (46.4%) 20 (62.5%)
Intergenerational sex with the older partner (≥5 years) 0.103
  Yes 1 (2.86%) 3 (10.7%) 0 (0.00%)
  Unsure 0 (0.00%) 0 (0.00%) 0 (0.00%)
  No 34 (97.1%) 24 (89.3%) 32 (100%)
Transactional sex 0 (0.00%) 0 (0.00%) 0 (0.00%)  NA
Penile–anal intercourse 0 (0.00%) 0 (0.00%) 0 (0.00%)  NA

BV: bacterial vaginosis, CCVR: combined contraceptive vaginal ring, COC: combined oral contraceptives, CST: community-state type, Ct: Chlamydia trachomatis, Ng: Neisseria gonorrhoeae, Tv: Trichomonas vaginalis, Mg: Mycoplasma genitalium, sd: standard deviation, IQR: interquartile range.

Chi-squared test (Fisher’s exact test when expected values < 5) for the assessment of association of frequency among groups, unpaired Mann–Whitney U test for comparison of medians, and unpaired Student’s t test for comparison of means.

aMissing data from two adolescents (COC: n = 1; Net-En: n = 0; CCVR: n = 1).

bMissing data from 26 adolescents (COC: n = 5; Net-En: n = 10; CCVR: n = 11).

cMissing data from nine adolescents (COC: n = 2; Net-En: n = 5; CCVR: n = 2).